Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20anguilla_20[genbank_20GCA_5F000695075.1_202014-05-20] 501,148 sequences; 1,018,701,900 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq422119 114 1e-20 seq19981 114 1e-20 seq1736 107 2e-18 seq279539 100 2e-16 >seq422119 Length=456 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || ||||||||||| || ||||| |||||||||| ||||| || Sbjct 127 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 186 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||| ||||| || |||||||||| |||||| || ||||| ||||| || Sbjct 187 GTTGCTCTTGCGGTTGCAGGCGTCCTTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTG 246 Query 66169 GGACTCAATGATGGCGTGCCA 66189 ||||| |||| |||| ||| Sbjct 247 CGACTCGATGACCGCGTACCA 267 >seq19981 Length=13813 Score = 114 bits (126), Expect = 1e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 |||||||||| ||| |||| || || ||||||||||| |||||||| ||||||||||| Sbjct 2893 AGGAGGTGCAGGTGACGGAAGCCCGCTGTTTCTACGGTTTCCAGATCGCCATGGAGAACA 2952 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 | ||||| ||||||||||| | || |||||||| ||||||| ||| Sbjct 2953 TACACTCTGAGATGTACAGCCTGCTGATCGATACCTACATCAAGGA 2998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || |||| || || || | |||||| || ||||||||||| ||||| | Sbjct 3633 TGGTGGCGTTCGCGGCTGTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCCGCCATCTTCT 3692 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCG 61612 || |||||||||| || || ||||| || ||||||||| ||| ||| | || || | Sbjct 3693 GGCTGAAGAAACGAGGCCTCATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCCGAG 3752 Query 61613 ACGAGG 61618 |||||| Sbjct 3753 ACGAGG 3758 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||| || | | || || || | || || || | ||||||||| | ||| | || Sbjct 1835 GAACCCTTACTTCGTGACAACCCCAGACGGTTTGTCATCTTCCCCATCCAATATCACGAC 1894 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| ||||||||||||||||||||||| | ||| ||||| Sbjct 1895 ATATGGCAAATGTACAAGAAGGCGGAAGCTTCCTTCTGGACCGCGGAAGAGGT 1947 >seq1736 Length=128588 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||| |||||| | || || || ||||||||||| ||||| | Sbjct 23196 TGGAGCGATTCAGTCAGGAGGTCCAAGTGACAGAAGCACGGTGTTTCTACGGATTCCAAA 23137 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | || ||||||||| ||||||| || |||||||| ||||||| || || ||||||| Sbjct 23136 TCGCGATGGAGAATATCCACTCAGAAATGTACAGCCTTCTCATTGACACCTACATCA 23080 >seq279539 Length=228 Score = 100 bits (110), Expect = 2e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || |||||||||||||||||||| ||||| || || |||||||| | Sbjct 72 CATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCGCGAGCCCGCTGCTCCTCCTT 131 Query 66400 -GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 ||||| || || || || |||||||| |||||||| ||||| || ||||||| Sbjct 132 CCCCGTG-TTCTTCTTCAGCTCCAGGAACTCGAAGATGTCAAAGTGCCAGGGCTCCAGGT 190 Query 66459 AGATGGCGAACG 66470 | |||||||||| Sbjct 191 ACATGGCGAACG 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395139757526720