Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq670 343 3e-92 seq1472 340 3e-91 seq1546 320 3e-85 seq4707 266 6e-69 seq2042 233 3e-59 seq52073 196 8e-48 >seq670 Length=345836 Score = 343 bits (380), Expect = 3e-92 Identities = 254/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 341020 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 340961 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 340960 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 340901 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 340900 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 340841 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 340840 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 340781 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 340780 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 340726 >seq1472 Length=273364 Score = 340 bits (376), Expect = 3e-91 Identities = 253/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 7070 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 7129 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 7130 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTAGGTGAACAATCCAACGCTTGGTG 7189 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7190 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 7249 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || Sbjct 7250 TGAACGCTTGGCTGCCACAAGCCAGTTAGCCCTGTGGTAACTTTTCTGACACCTCCTGCT 7309 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||||||| |||||||| Sbjct 7310 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATTCA 7364 >seq1546 Length=270052 Score = 320 bits (354), Expect = 3e-85 Identities = 249/294 (85%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||| Sbjct 218676 TACTGAGCAGGATTACTATTGCAAC-ACA-TCATCAGTAGGGTAAAACTAACCTGTCTCA 218733 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct 218734 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACACTCAGTGA 218793 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 218794 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACATCGCTAT 218853 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| |||||| |||||||||||||||||||||||||||| ||| || || | Sbjct 218854 GAACGCTTGGCCGCCACAGGCCAGTTATCCCTGTGGTAACTTTTCTGACACATCCTGCTT 218913 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| | | | |||||||| ||||| | |||||| ||| | |||||| Sbjct 218914 AAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTATATTCA 218967 >seq4707 Length=73663 Score = 266 bits (294), Expect = 6e-69 Identities = 185/208 (89%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || |||||||||||||||||||| |||||||| Sbjct 151 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTACCCTGTCTC 210 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 211 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTAGGTGAACAATCCAACGCTTGGTG 270 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 271 AATTCTGCTTCAG--TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 328 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTA 207 |||||||||||| ||| ||||||||||| Sbjct 329 TGAACGCTTGGCCGCCCCAAGCCAGTTA 356 >seq2042 Length=212939 Score = 233 bits (258), Expect = 3e-59 Identities = 194/236 (82%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| | | | ||||| |||| || || || ||||||||| |||||||||||||||| Sbjct 164922 TACTGAACAGGATTACTATTGCAGCAACACATCCTCAGTAGGGCAAAACTAACCTGTCTC 164863 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| ||||||||||||||||||||||| ||||||| ||||||| ||||||||||| | Sbjct 164862 ATGATGGTCTAAACCCAGCTCACGTTCCTTATTAGTAGGTGAACTATCCAACGCTTGGCA 164803 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG-----CAACGT 174 ||||||||||| ||||||||||||||| | |||||||||||| |||| | | || Sbjct 164802 AATTCTGCTTCACAATGATAGGAAGAGCCAATATCGAAGGATCAGAAAGTGACTCTAAGT 164743 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 | |||||||| ||| | || |||| ||||| ||||||||||||||||||||| || Sbjct 164742 CTCTATGAACACTTAACCGCGACAAACCAGTAATCCCTGTGGTAACTTTTCTGACA 164687 >seq52073 Length=1090 Score = 196 bits (216), Expect = 8e-48 Identities = 137/155 (88%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 937 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 995 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 996 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1055 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||||||| |||||||||||||||||||||| Sbjct 1056 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCG 1090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853723238304