Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq670 594 2e-167 seq4707 426 5e-117 seq1472 293 8e-77 >seq670 Length=345836 Score = 594 bits (658), Expect = 2e-167 Identities = 460/541 (85%), Gaps = 16/541 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 340693 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 340634 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 340633 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 340574 Query 127 G-GCCCG---CGAA---GGACCTTAACGCCAGAA---AATGGTCGGTGAAGACCAGTT-- 174 | ||||| ||| || ||| ||||||||| | | || | | | | Sbjct 340573 GCGCCCGGGGCGAGCCGGGCGCTTGACGCCAGAAGCGAGAGCCCGCTCGGGGCTCGCCTC 340514 Query 175 -CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAA 232 |||| ||| | ||||| ||||||||||||| ||||||||||||||| ||| |||| Sbjct 340513 CCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAG 340454 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | |||||||||||||||||||||||| ||| |||||| | | |||||||||||||| Sbjct 340453 GC--CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGC 340396 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 340395 TCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 340336 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 340335 CTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTA 340276 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340275 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 340216 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 340215 TTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAAC 340156 Query 533 A 533 | Sbjct 340155 A 340155 >seq4707 Length=73663 Score = 426 bits (472), Expect = 5e-117 Identities = 404/512 (79%), Gaps = 49/512 (10%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| | |||| |||| |||| | ||||||||||||||||||| Sbjct 476 CTTCTGCTCCACGGGAGGT--CTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 533 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| || ||||||||| |||||||||||||| || |||| |||||| | Sbjct 534 GTTTGACAGGTGGACCGCCCCAGTCAAACTCCCCACCTCCCACTGTC-----CCCGGAGC 588 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 || |||| || | | ||| || ||| | | Sbjct 589 GGGTCGCGC------------CCGGG----GCTCG-------CC---TCCCC------GG 616 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTT 245 ||||| ||||||||||||| ||||||||||||||| ||| |||| | ||||||||| Sbjct 617 GTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAGGC--CTCCCACTT 674 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||||||||| ||| |||||| | | ||||||||||||||||||||||||||| Sbjct 675 ATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTT 734 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 735 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGGT 794 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||||||||||||||| |||||||||||||||||||||| || | | || || Sbjct 795 AGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAAATA-AGG--TAGCCAA 851 Query 426 TTGGCT----ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 || || | || |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 852 ATGCCTCGTCATCTAAAGAGAGTCATAGTCACTCCCGCCGTTTACCCGCGCTTCATTGAG 911 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||||||||||||||||||||||||||||||| Sbjct 912 TTTCTTCACTTTGACATTCAGAGCACTGGGCA 943 >seq1472 Length=273364 Score = 293 bits (324), Expect = 8e-77 Identities = 335/441 (76%), Gaps = 27/441 (6%) Strand=Plus/Plus Query 4 GATCTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTT 63 || ||| || || || |||| ||||||| |||| |||| | |||||||||| | | ||| Sbjct 7394 GACCTTCTGTTCAACGGGAGTTTTCTGTCCTCCCTGAGCTCGCCTTAGGACAGCAGTGTT 7453 Query 64 ATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGG 123 | |||| |||| ||| ||||||||| ||||||||||||||| || |||| || | | || Sbjct 7454 ACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCATTGTCCTCGAGCGGG 7513 Query 124 ATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 ||| | || ||| || ||| | | || | || |||| ||| Sbjct 7514 T--------CGACG--CCATAA-GCAAGAGCCCGCTTGGGGCTCGCCTCC-CCGCCTCAC 7561 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCA 242 || ||||| ||||||| ||||| ||||||||||||||| ||| |||| | |||||| Sbjct 7562 TGGGTAAGTGAAAAAACAATAAGAGTAGTGGTATTTCACCGGCGGCCGAGGC--CTCCCA 7619 Query 243 CTTATTCTACACCTCTCAAGTCAT-----TTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||||| || |||| |||||| | | ||||||||||||||||||| Sbjct 7620 CTTATTCTACACCTGTCTCTTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAAC 7679 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| Sbjct 7680 AGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCACAAGA 7739 Query 358 TAGTAGATAGGGACAGTGG---GAATCTCGTTAAT-CCATTCATGCGC--GTCACTAATT 411 |||||| |||||||| ||| |||| | ||| |||| | | | | |||||||| Sbjct 7740 TAGTAGGTAGGGACACTGGCATGAAT-GGATGAATGAGATTCCTACTCATGCCACTAATT 7798 Query 412 AGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||| Sbjct 7799 CGATGACGAGGCATTTGGCTA 7819 Score = 176 bits (194), Expect = 1e-41 Identities = 144/171 (84%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 ||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 13827 TCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAA 13886 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG---GAATCTCG 384 |||||||||||||||||||||||| | ||||||||| |||||||| ||| |||| Sbjct 13887 GCCCGTTCCCTTGGCTGTGGTTTCACAAGATAGTAGGTAGGGACACTGGCATGAAT-GGA 13945 Query 385 TTAAT-CCATTCATGCGC--GTCACTAATTAGATGACGAGGCATTTGGCTA 432 | ||| |||| | | | | |||||||| |||||||||||||||||||| Sbjct 13946 TGAATGAGATTCCTACTCATGCCACTAATTCGATGACGAGGCATTTGGCTA 13996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633904774432