Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq52073 107 3e-21 seq670 104 4e-20 seq1546 96.9 6e-18 seq1472 86.0 1e-14 >seq52073 Length=1090 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 939 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 882 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 881 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 822 Query 121 GAA 123 ||| Sbjct 821 GAA 819 >seq670 Length=345836 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 341018 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 341075 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 341076 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 341129 >seq1546 Length=270052 Score = 96.9 bits (106), Expect = 6e-18 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| || | || ||| ||| || | Sbjct 218678 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCTTGGCTGGGCAGCCAAT 218621 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 218620 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCA 218566 >seq1472 Length=273364 Score = 86.0 bits (94), Expect = 1e-14 Identities = 91/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | ||||| || | || ||| ||| || | Sbjct 7072 GTACTAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCTTGGCTGGGCAGCCAAT 7015 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC-TAAGTCAGAATCCA 115 | |||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 7014 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCAGAAGTCAGAATCCA 6959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818571397376