Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq5861 114 5e-20 seq1375 107 8e-18 seq2484 100 1e-15 >seq5861 Length=59157 Score = 114 bits (126), Expect = 5e-20 Identities = 139/185 (75%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| | |||| || |||||||||||| ||| || | |||||||| | | |||||| Sbjct 12884 CTCGATGAGCATGCCGATGGTCATGCGCGAGGGGAAGCCGTGCGGGTTGAACAGGATGTC 12943 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCAC--CAGGCCGTTG 449104 ||||||| |||| | || |||||||||||||||||| | | |||| | ||| | Sbjct 12944 GGGCGTCATGCCGCTCTCGGTGAAGGGCATGTCCTCGGCG--GGCCACAGCCGGCTCAGG 13001 Query 449105 ACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGAA 449163 | ||||||||| ||||| |||||| ||||||||| || || | ||| ||||| | | Sbjct 13002 ATGCCCTTCTGCCCGTGCCGGCTGGCGAACTTGTCGCCGATGGT-GGGGTTGCGCGGCAC 13060 Query 449164 GCGCA 449168 ||||| Sbjct 13061 GCGCA 13065 >seq1375 Length=290674 Score = 107 bits (118), Expect = 8e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||||| |||| |||||||| ||||||||||||| || ||||| ||||||| Sbjct 242378 CTCCTTGAGTCGAGGCACACCCAGGGTGACGTTCTTGGCCGACACACCGGCGTAGTGGAA 242319 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||||||| ||| ||| ||||| || | | ||||| | || ||| ||||| Sbjct 242318 GGTGTTCAGGGTCATCTGTGTGGCCGGCTCTCCCAGGGACTGGGCGGCCAGGGCTCCTAC 242259 Query 349204 CATCTCGCCGGG 349215 |||||| ||||| Sbjct 242258 CATCTCCCCGGG 242247 >seq2484 Length=158275 Score = 100 bits (110), Expect = 1e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || |||||||||| | ||| | |||||||| | |||| ||| || || || Sbjct 130184 GGCGTTGATGATCTCCTTGATCCGGGGGACCCCCAGGGTGATGTTCATGGAGGCCACTCC 130243 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||||||||||||||| | |||||||| ||||||| |||||| ||||| | |||| Sbjct 130244 GGCAAAGTGGAAGGTTTTGAGGGTCATCTGCGTGCCGGGCTCCCCGATACTCTGG 130298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2082571867341782