Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04]
79,209 sequences; 1,413,032,609 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq5861 114 5e-20
seq1375 107 8e-18
seq2484 100 1e-15
>seq5861
Length=59157
Score = 114 bits (126), Expect = 5e-20
Identities = 139/185 (75%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
||||| | |||| || |||||||||||| ||| || | |||||||| | | ||||||
Sbjct 12884 CTCGATGAGCATGCCGATGGTCATGCGCGAGGGGAAGCCGTGCGGGTTGAACAGGATGTC 12943
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCAC--CAGGCCGTTG 449104
||||||| |||| | || |||||||||||||||||| | | |||| | ||| |
Sbjct 12944 GGGCGTCATGCCGCTCTCGGTGAAGGGCATGTCCTCGGCG--GGCCACAGCCGGCTCAGG 13001
Query 449105 ACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTC-CCCCTGCTCGGGCTTGCGTGTGAA 449163
| ||||||||| ||||| |||||| ||||||||| || || | ||| ||||| | |
Sbjct 13002 ATGCCCTTCTGCCCGTGCCGGCTGGCGAACTTGTCGCCGATGGT-GGGGTTGCGCGGCAC 13060
Query 449164 GCGCA 449168
|||||
Sbjct 13061 GCGCA 13065
>seq1375
Length=290674
Score = 107 bits (118), Expect = 8e-18
Identities = 103/132 (78%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143
||||||||||| |||| |||||||| ||||||||||||| || ||||| |||||||
Sbjct 242378 CTCCTTGAGTCGAGGCACACCCAGGGTGACGTTCTTGGCCGACACACCGGCGTAGTGGAA 242319
Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203
||| | ||||||| ||| ||| ||||| || | | ||||| | || ||| |||||
Sbjct 242318 GGTGTTCAGGGTCATCTGTGTGGCCGGCTCTCCCAGGGACTGGGCGGCCAGGGCTCCTAC 242259
Query 349204 CATCTCGCCGGG 349215
|||||| |||||
Sbjct 242258 CATCTCCCCGGG 242247
>seq2484
Length=158275
Score = 100 bits (110), Expect = 1e-15
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131
||||| || |||||||||| | ||| | |||||||| | |||| ||| || || ||
Sbjct 130184 GGCGTTGATGATCTCCTTGATCCGGGGGACCCCCAGGGTGATGTTCATGGAGGCCACTCC 130243
Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186
||||||||||||||| | |||||||| ||||||| |||||| ||||| | ||||
Sbjct 130244 GGCAAAGTGGAAGGTTTTGAGGGTCATCTGCGTGCCGGGCTCCCCGATACTCTGG 130298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2082571867341782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |