Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq103745 244 3e-62 seq109829 170 6e-40 seq114061 145 2e-32 seq207535 114 4e-23 seq90637 96.9 1e-17 >seq103745 Length=6952 Score = 244 bits (270), Expect = 3e-62 Identities = 158/173 (91%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 404 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCTCTTGG 463 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | Sbjct 464 CTGTGGTTTCGCTAGATAGTA-----GGACAGTGGGAATCTCGTTCATCCATTCATGCAC 518 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 ||||||||||||||||||| |||||||| |||| ||||||||||||| |||| Sbjct 519 GTCACTAATTAGATGACGAAGCATTTGGTCACCTCAAGAGAGTCATAGCTACT 571 >seq109829 Length=4044 Score = 170 bits (188), Expect = 6e-40 Identities = 99/102 (97%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1837 TCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAA 1778 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1777 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 1736 >seq114061 Length=3518 Score = 145 bits (160), Expect = 2e-32 Identities = 85/88 (97%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 GCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATT 60 Query 412 AGATGACGAGGCATTTGGCTACCTTAAG 439 ||||||| |||||||||||||||||||| Sbjct 61 AGATGACAAGGCATTTGGCTACCTTAAG 88 >seq207535 Length=1945 Score = 114 bits (126), Expect = 4e-23 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 ||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| Sbjct 426 CTCCCGCCGTTTACCTGCGCTTCATTGAATTTCTTCACTTTGACATTCAGTGCACTGGGC 367 Query 513 AGAAATCACATTGCGTCAACA 533 |||||| |||| |||||||| Sbjct 366 AGAAATTACATCACGTCAACA 346 >seq90637 Length=871 Score = 96.9 bits (106), Expect = 1e-17 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct 319 GAGTCATAGTTACTCCCGCCGTTTACCCACTCTTCATTGAATTTCTTCACTTTGACATTC 260 Query 501 AGA 503 ||| Sbjct 259 AGA 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1631790509888