Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq114061 315 2e-83 seq206946 239 1e-60 seq197754 107 6e-21 seq203915 105 2e-20 >seq114061 Length=3518 Score = 315 bits (348), Expect = 2e-83 Identities = 327/422 (77%), Gaps = 25/422 (6%) Strand=Plus/Plus Query 106 GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCC 165 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 3025 GATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACTC 3084 Query 166 GTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 || | |||||||||||| | ||||||||||||||||||||||||| ||| |||| Sbjct 3085 GTGGTCACCATGGTAGGCACAGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAAT 3144 Query 226 GAACCATCGCCGGCTCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA---- 279 || | || ||| | | ||| | ||||| | | | ||||| || ||||||| Sbjct 3145 GAGACGTCACCGCCACGAGGGCCAGCGATCGGCTCAAGGTTATCTAGAGTCACCAAAGCG 3204 Query 280 -----GGAGCCCCGA-AGG------GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC 327 || |||||| ||| || | |||||| ||| |||||| ||| | | || Sbjct 3205 GCCGGGGCTCCCCGAGAGGAACCCCGCATGGGTTTTGGGTCTGATAAATGCACGCATCCC 3264 Query 328 --GAAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-- 382 || ||| | | | || ||||||||||||||||||||| |||| |||||||| ||| Sbjct 3265 AGGAGGTCAGCGCTCGTTGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAC 3324 Query 383 GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT 442 || | | | |||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 3325 GTTA-GAGCGATCAAAGGAAACATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAC 3383 Query 443 AGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | | | ||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 3384 CGGCCGTGTGTACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGC 3442 Query 503 AG 504 || Sbjct 3443 AG 3444 >seq206946 Length=6305 Score = 239 bits (264), Expect = 1e-60 Identities = 326/446 (73%), Gaps = 33/446 (7%) Strand=Plus/Plus Query 81 ATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGA 140 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 3814 ATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTTCCTCTCCAGA 3873 Query 141 ATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGA 200 ||| ||| || |||||||||| |||| |||| || | |||||| || Sbjct 3874 ATC-AACACTGTTTCCCCGTTA---------ACCAAGGTAAGCACAGAAAGTACCATTGA 3923 Query 201 AAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT- 259 ||||||||| |||| | ||| ||||| | |||||| | | ||| | |||| | | | Sbjct 3924 AAGTTGATACGGCAAACATTCAAATGAGACGTCGCCGCCACGAGGGCCAGCGAATGGCTC 3983 Query 260 -AAGTTATTATGAATCACCAA-------GGAGC--CCCGA-AGG------GCGTTGGTTT 302 | ||||| || ||||||| || || || || ||| | | ||||| Sbjct 3984 AAGGTTATCTAGAGTCACCAAAGCGGCCGGGGCAGCCTGAGAGGCACCCCACATGGGTTT 4043 Query 303 TTTATCTAATAAATACACCCCT-TCCGAA-GTC-GGGGTTTTTAGCATGTATTAGCTCTA 359 | ||| |||||| ||| | ||||| ||| | | | || |||||||||||||||| Sbjct 4044 TGGGTCTGATAAATGCACGTATCCCCGAAGGTCAGCGCATGTTGGCATGTATTAGCTCTA 4103 Query 360 GAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||| | || |||| | | | | | | |||||| ||| |||||||||||||| Sbjct 4104 TAATTGCTACATTTATTTAAGAAACATTAGAGCGATCAAAGGAACCATAACTGATTTAAT 4163 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||||||||| | || | ||||||||| |||||||| ||||||| Sbjct 4164 GAGCCATTCGCAGTTTCACTGTACCGGCTGTGTGTACTTAGACTTGCATGGCCTAATCTT 4223 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||| ||| |||| ||||| Sbjct 4224 TGAAACAAGCACATG-CTACCGGCAG 4248 >seq197754 Length=7638 Score = 107 bits (118), Expect = 6e-21 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||||||||||||||||||||||||||||||| | | | || |||||| |||| Sbjct 3069 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTATTTAGACTTGCA 3128 Query 467 TGGCTTAATCTTTGAGACAAGCAT 490 |||||||||||||||||||||||| Sbjct 3129 TGGCTTAATCTTTGAGACAAGCAT 3152 >seq203915 Length=8620 Score = 105 bits (116), Expect = 2e-20 Identities = 121/159 (76%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||| | ||| | | || || | | ||| ||||| | ||| |||||| Sbjct 7162 ACTCATTCCAATGAGAAGGTCTCGAACAAGTCTTTTATTGTTATTTTTCATCA-TACCTC 7220 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | ||||| | || |||||||| | ||| |||| |||||||||||||||||| |||| Sbjct 7221 CCAGAGTCGGAAGTGTGTAATTTGAGAACCTTCTGCATTCCTTGGATGTGGTAGCTGTTT 7280 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAAT--TCCCC 158 || |||| | ||||| ||||| ||||| ||| ||||| Sbjct 7281 GTCCGGCTACGTCTCCTGAATCAAACCCAAATCCTCCCC 7319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507250725376