Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq47 111 3e-22 >seq47 Length=1124455 Score = 111 bits (122), Expect = 3e-22 Identities = 157/217 (72%), Gaps = 14/217 (6%) Strand=Plus/Minus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG------GGAGCCAGGA-CTTTTACTTTGAAAAA 87 ||| |||||||| ||||||| |||| || | | ||| | |||||||||||||| Sbjct 226535 CCGGATGCCCTTGGTTGGGTGT-CCGGTCCTCAGGGGTCCGGAGCGTTTACTTTGAAAAA 226477 Query 88 ATTAGAGTGTTCAAAGCAGGC-----CTTTGCTCGAATACATTAGCATGGAATAATAGAA 142 || |||||||||||||| ||| | || |||| | | ||| |||||||| ||| Sbjct 226476 ATCAGAGTGTTCAAAGCGGGCACCAAACTCGCCTGAATGCCTGAGCTAGGAATAATGGAA 226417 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAG 202 |||||| | |||||||||||||| |||||| | ||| | |||||||| ||||| | Sbjct 226416 TAGGAC-TCCGGTTCTATTTTGTGGGTTTCCTGAACCAGGGCCATGATTAAGAGGGACGG 226358 Query 203 TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 |||||| | ||||| | |||||||||||| Sbjct 226357 CCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATT 226321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915101753280