Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10640 149 3e-33 seq1242 93.3 2e-16 >seq10640 Length=2165961 Score = 149 bits (164), Expect = 3e-33 Identities = 111/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || | ||| |||||||||||||||||||||||||| |||| |||||||| Sbjct 1429825 AGAGCGTACGCGATGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGG 1429766 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||||||||||| ||||||||| ||| ||||||||||| ||||| | ||||| Sbjct 1429765 GGAAACTCTGGTGGAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGT 1429706 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 1429705 ATAGGGGCGA 1429696 >seq1242 Length=5268141 Score = 93.3 bits (102), Expect = 2e-16 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 65 TCTAAATGGGAG--GTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCA 122 |||| || |||| ||||| | | ||||| |||||||| ||| ||||||||||| | | Sbjct 5005564 TCTAGATAGGAGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTGAA 5005623 Query 123 CAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||||| | | ||||| ||||||| |||||| |||||||||| || || ||| ||| Sbjct 5005624 CAAGTACCGAAAAGGAAAGTTGAAAAGAACTTTGAAAAGAGAGTTTAACAGGGCGTAAAA 5005683 Query 183 TTGTT 187 |||| Sbjct 5005684 CTGTT 5005688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079769734250