Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1087 156 1e-35 seq10547 154 5e-35 seq5414 154 5e-35 seq811 152 2e-34 seq2186 141 3e-31 >seq1087 Length=169480 Score = 156 bits (172), Expect = 1e-35 Identities = 92/96 (96%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 144815 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 144756 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||| | ||||||| Sbjct 144755 TTCAGAGCACTGGGCAGAAATCACATCGTGTCAACA 144720 Score = 114 bits (126), Expect = 4e-23 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 128133 TTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCATTGGGCAGAAATCACA 128074 Query 523 TTGCGTCAACATC 535 ||| ||||||||| Sbjct 128073 TTGTGTCAACATC 128061 >seq10547 Length=7526941 Score = 154 bits (170), Expect = 5e-35 Identities = 91/95 (96%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 6475658 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 6475599 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||| | |||||| Sbjct 6475598 TTCAGAGCACTGGGCAGAAATCACATCGTGTCAAC 6475564 Score = 138 bits (152), Expect = 4e-30 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 391 CATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGT 450 ||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||| Sbjct 6477300 CATTCATGCGCGTCACTAATTAGATGACGAGGCATCTGGCTACTTTAACAGACCCATAGT 6477241 Query 451 TACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||||||||||||||| | | |||| ||||||||||||| |||| |||| Sbjct 6477240 TACTCCCGCCGTTTATCTGTGCTTCATTGAATTTCTTCAAGTTGATCTTCA 6477190 >seq5414 Length=4587 Score = 154 bits (170), Expect = 5e-35 Identities = 91/95 (96%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4493 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 4552 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||||||||| | |||||| Sbjct 4553 TTCAGAGCACTGGGCAGAAATCACATCGTGTCAAC 4587 >seq811 Length=150607 Score = 152 bits (168), Expect = 2e-34 Identities = 99/109 (91%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 ||||||| |||| ||| |||||| | | |||||||||||||||||||||||||||||| Sbjct 88080 CTACACCCCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTT 88021 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 88020 TCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGCGGTTTCGCTAGA 87972 >seq2186 Length=9496 Score = 141 bits (156), Expect = 3e-31 Identities = 89/96 (93%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct 180 AGAGAGTCATAGTTACTCACGCTGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACA 121 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||| | | ||||||| Sbjct 120 TTCAGAGCACTGGGCAGAAATCACCTCGTGTCAACA 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635024461280