Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq71 86.0 3e-11 >seq71 Length=1164749 Score = 86.0 bits (94), Expect = 3e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||||| || | ||||| || ||||||||||| | || ||||| ||||||| Sbjct 1045478 CTCCTTGAGTCGAGGTACACCCAGCGTGACGTTCTTGGCGGACACACCGGCGTAGTGGAA 1045419 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||||||| ||| ||| ||| || |||| |||| | || ||| ||| || Sbjct 1045418 GGTGTTCAGGGTCATCTGTGTGGCGGGTTCTCCGAGAGACTGAGCAGCCAGGGCGCCCAC 1045359 Query 349204 CATCTCGCCGGG 349215 |||||| || || Sbjct 1045358 CATCTCTCCTGG 1045347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084445466761530