Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07-
28] 29,785 sequences; 866,963,281 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq169 159 5e-37
seq131 158 2e-36
seq768 131 3e-28
>seq169
Length=1117822
Score = 159 bits (176), Expect = 5e-37
Identities = 179/234 (76%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| |
Sbjct 903462 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 903519
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || | ||||||| | ||||||||||||| |||| | ||
Sbjct 903520 CTCGTTCATGGGAAATAGTTGCAATCCCCGATCCCCATCACGAGCGGGGTTCAGCGGGTT 903579
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| ||| ||||| |||| | | || || || ||||||| ||||||||||
Sbjct 903580 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGGYCCGCTCAGTGTGGCGCGCGTGCA 903639
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||| |||||||||||||||||||| ||||| || | ||||
Sbjct 903640 GCCCCGGCCATCTAAGTGCATCACAGACCTGTTATTG-CTCAATCTCGCTTGGC 903692
>seq131
Length=1538555
Score = 158 bits (174), Expect = 2e-36
Identities = 178/233 (76%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| ||
Sbjct 1290710 TACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-CC 1290767
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120
||||| | | || | ||||||| | ||| ||||||||| |||| | |||
Sbjct 1290768 TCGTTCATGGGAAATAGTTGCAATCCCCGATCTCCATCACGAGCGGGGTTCAGCGGGTTA 1290827
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| ||| ||||| |||| | | || || || ||||||| |||||||||| |
Sbjct 1290828 CCCACGCCTCTCGGCGAAGGGTAGACACACGCTGGCCCGCTCAGTGTGGCGCGCGTGCAG 1290887
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| | |||||||||||||||||||||| ||||||| || || || ||||||
Sbjct 1290888 CCCCGGACATCTAAGGGCATCACAGACCAGTTATTG-CTTAATCTCGCGTGGC 1290939
>seq768
Length=211953
Score = 131 bits (144), Expect = 3e-28
Identities = 163/219 (74%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75
|| || |||||| |||||| ||||| |||||||||| |||| | ||||||| | | ||
Sbjct 18469 ACTTAATCAACGTGAGCTT-ATGACCCGCGCTTACTGGGAACT-CCTCGTTCATGGGAAA 18412
Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGG 134
|| ||||||| | ||||||||||||| |||| | |||||| ||| ||||
Sbjct 18411 CAGTTGCAATCCCCGATCCCCATCACGAGCGGGGTTCAGCGGGTTACCCACGCCTCTCGG 18352
Query 135 CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194
|||| | | || || ||| |||||| |||| ||||| |||| | ||||||||
Sbjct 18351 TGAAGGGTAGACACACGCTGACCCGCTCAGTGCGGCGCACGTGCAGCCCCGGACATCTAA 18292
Query 195 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||||||||||||||||| ||| ||||| || ||||||
Sbjct 18291 GGGCATCACAGACCTGTTHTTG-CTCAATCTCGCGTGGC 18254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751783016275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |