Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq169 159 5e-37 seq131 158 2e-36 seq768 131 3e-28 >seq169 Length=1117822 Score = 159 bits (176), Expect = 5e-37 Identities = 179/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 903462 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 903519 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || | ||||||| | ||||||||||||| |||| | || Sbjct 903520 CTCGTTCATGGGAAATAGTTGCAATCCCCGATCCCCATCACGAGCGGGGTTCAGCGGGTT 903579 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| | | || || || ||||||| |||||||||| Sbjct 903580 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGGYCCGCTCAGTGTGGCGCGCGTGCA 903639 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||| |||||||||||||||||||| ||||| || | |||| Sbjct 903640 GCCCCGGCCATCTAAGTGCATCACAGACCTGTTATTG-CTCAATCTCGCTTGGC 903692 >seq131 Length=1538555 Score = 158 bits (174), Expect = 2e-36 Identities = 178/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| || Sbjct 1290710 TACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-CC 1290767 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTA 120 ||||| | | || | ||||||| | ||| ||||||||| |||| | ||| Sbjct 1290768 TCGTTCATGGGAAATAGTTGCAATCCCCGATCTCCATCACGAGCGGGGTTCAGCGGGTTA 1290827 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| ||| ||||| |||| | | || || || ||||||| |||||||||| | Sbjct 1290828 CCCACGCCTCTCGGCGAAGGGTAGACACACGCTGGCCCGCTCAGTGTGGCGCGCGTGCAG 1290887 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | |||||||||||||||||||||| ||||||| || || || |||||| Sbjct 1290888 CCCCGGACATCTAAGGGCATCACAGACCAGTTATTG-CTTAATCTCGCGTGGC 1290939 >seq768 Length=211953 Score = 131 bits (144), Expect = 3e-28 Identities = 163/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 || || |||||| |||||| ||||| |||||||||| |||| | ||||||| | | || Sbjct 18469 ACTTAATCAACGTGAGCTT-ATGACCCGCGCTTACTGGGAACT-CCTCGTTCATGGGAAA 18412 Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGG 134 || ||||||| | ||||||||||||| |||| | |||||| ||| |||| Sbjct 18411 CAGTTGCAATCCCCGATCCCCATCACGAGCGGGGTTCAGCGGGTTACCCACGCCTCTCGG 18352 Query 135 CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 |||| | | || || ||| |||||| |||| ||||| |||| | |||||||| Sbjct 18351 TGAAGGGTAGACACACGCTGACCCGCTCAGTGCGGCGCACGTGCAGCCCCGGACATCTAA 18292 Query 195 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||||||| ||| ||||| || |||||| Sbjct 18291 GGGCATCACAGACCTGTTHTTG-CTCAATCTCGCGTGGC 18254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751783016275