Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq768 107 1e-21 seq1234 75.2 6e-12 >seq768 Length=211953 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 17954 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 17895 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 17894 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 17838 >seq1234 Length=92438 Score = 75.2 bits (82), Expect = 6e-12 Identities = 88/118 (75%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGA-TAACATCGCC 59 |||||||||||||||| |||| | | | |||| ||| |||| ||| || | | || Sbjct 53421 GAACCCAAAGACTTTGGTTTCCCAGATGCTGCCCGGCGGGTCATGGTGAGTAGCGCCACC 53480 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||| ||| ||||| | | ||||| | |||||||||| |||||||| Sbjct 53481 GGATCGCTAGTCGACATCGTTTATGATCGGAACTACAATGGTATCTGATTGTCTTCGA 53538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278322261150