Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq699 150 7e-34 seq153 111 7e-22 seq136 80.6 1e-12 >seq699 Length=227582 Score = 150 bits (166), Expect = 7e-34 Identities = 101/113 (89%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 133464 ACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGG 133523 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 133524 CCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 133576 >seq153 Length=1149359 Score = 111 bits (122), Expect = 7e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 944133 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 944074 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | | ||||||||||| | ||||||| | | ||||| ||||||| |||||| | Sbjct 944073 ACCGTCACGAGACCGATAGAGGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 944014 Query 160 AGAGAGTTAAAAAG 173 |||||||| || || Sbjct 944013 AGAGAGTTCAAGAG 944000 >seq136 Length=1323392 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/135 (74%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| ||||||||||| |||||| ||||| |||| ||| | | | ||||| ||||| Sbjct 33707 GAGTCAGGTTGTTTGGGACTGCAGC-CTAAAGTGGGTGGTTGACTCCATCTAAGACTAAA 33765 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||| | ||| ||||||| | | ||||| | ||||| |||||| | Sbjct 33766 TACTGGCACGAGACCAACAGCAGACAAGTACCTTAAGGGAAAGTTSAAAAGAACTTTGAA 33825 Query 159 AAGAGAGTTAAAAAG 173 |||||| || || Sbjct 33826 GCAAGAGTTCAAGAG 33840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079361111750