Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq131 237 3e-60 seq768 230 4e-58 seq689 154 2e-35 seq8905 91.5 2e-16 seq608 91.5 2e-16 seq169 89.7 8e-16 >seq131 Length=1538555 Score = 237 bits (262), Expect = 3e-60 Identities = 209/260 (80%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || |||| | ||||||| |||||||||| |||| | |||||||||||||||||||| Sbjct 1290854 ACACGCTGGCCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA 1290913 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 || |||||||| | || || |||||| ||||| | |||||||||||||| | | Sbjct 1290914 CCAGTTATTGCTT--AATCTCGCGTGGCTGAGAGCCACTTGTCCCTCTAAGAAGTTGGAC 1290971 Query 122 ACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || ||| | | | | |||||||||| | |||||||||||||||||||| Sbjct 1290972 GCCGACCGCACGGGGCCGCGTAACTATTTAGCATGCCGGAGTCTCGTTCGTTATCGGAAT 1291031 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| || |||||||||||||||||||||||||||| |||| |||||| | Sbjct 1291032 TAACCAGACAAATCGCTMCACCAACTAAGAACGGCCATGCACCACCCCCCACAGAATCGA 1291091 Query 239 GAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| Sbjct 1291092 GAAAGAGCTATCAATCTGTC 1291111 >seq768 Length=211953 Score = 230 bits (254), Expect = 4e-58 Identities = 200/246 (81%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||| |||| ||||| |||| | |||||||||||||||||||||||||| |||| || Sbjct 18325 TCAGTGCGGCGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTHTTGC-TC 18267 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | | ||||| ||||| | |||||||||| ||| | | || ||| | | Sbjct 18266 AATCTCGCGT-GGCTGAGAGCCACTTGTCCCTCTAAYAAGTTGGACGCCGACCGCACGGG 18208 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | |||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 18207 GCCGCGTAACTATTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 18148 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| Sbjct 18147 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGATCTATCAA 18088 Query 253 TCTGTC 258 |||||| Sbjct 18087 TCTGTC 18082 >seq689 Length=283669 Score = 154 bits (170), Expect = 2e-35 Identities = 90/93 (97%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 47526 TCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCA 47467 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||| ||||||||||||||||||||| Sbjct 47466 CCCACAGAATCGAGAAAGAGCTATCAATCTGTC 47434 >seq8905 Length=708 Score = 91.5 bits (100), Expect = 2e-16 Identities = 75/89 (84%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 28 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTG 87 || ||| |||| | || ||||||||||||||||||||||||||| ||||| || || || Sbjct 520 GCTTGCAGCCCTGGACGTCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCA-TG 577 Query 88 GCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 |||| ||||| | ||||||||||||||| Sbjct 578 GCTGAGAGCCACTTGTCCCTCTAAGAAGC 606 >seq608 Length=243968 Score = 91.5 bits (100), Expect = 2e-16 Identities = 74/90 (82%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCA----CTCCACCAACTAAGAACGGCC 214 ||||||||| ||||| |||||||||||| |||| | |||||||||||||||||| || Sbjct 5013 GTCTCGTTCATTATCCGAATTAACCAGAGAAATAAATAGCTCCACCAACTAAGAACGACC 5072 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGA 244 | ||||| ||||||| | ||| ||||| | Sbjct 5073 AAGCACCGCCACCCACAAGATCGAGAAAKA 5102 >seq169 Length=1117822 Score = 89.7 bits (98), Expect = 8e-16 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | |||||||| |||||||||||||||||||| ||| Sbjct 903621 TCAGTGTGGCGCGCGTGCAGCCCCGGCCATCTAAGTGCATCACAGACCTGTTATTG-CTC 903679 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAA 111 || | || ||||||| ||| | | |||| ||||| Sbjct 903680 AATC-TCGCTTGGCTGAGAGCTACTTGTCCTTCTAA 903714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796570089585