Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10746 325 7e-87 seq571 324 2e-86 seq13 320 3e-85 seq5234 295 1e-77 seq39 132 8e-29 seq225 86.0 1e-14 seq862 82.4 1e-13 seq69 78.8 2e-12 >seq10746 Length=397 Score = 325 bits (360), Expect = 7e-87 Identities = 232/265 (88%), Gaps = 1/265 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 84 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 143 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 144 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 203 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 204 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 263 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||| |||||| |||||| || | ||| | | | ||||| || ||| Sbjct 264 CTGTGGTAACCTTTCTGACACCTCCTGCTTAAAACCCAAAAAGCCAGAAGGACCGTGAGG 323 Query 271 -CCACACTTTCATGGTTTGTATTCA 294 || | |||||| ||| |||||||| Sbjct 324 CCCCCGCTTTCACGGTCTGTATTCA 348 >seq571 Length=348586 Score = 324 bits (358), Expect = 2e-86 Identities = 230/264 (87%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct 284145 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACAGTCTAAACCCAGCTTACGTTCCCTA 284086 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| |||||||||||| || |||||||||||||| Sbjct 284085 TTAGTGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATTATAGGAAGAGCCGA 284026 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 284025 CATCGAAGGATCAAAAAGCGGCGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 283966 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 283965 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 283906 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || |||||||| ||| |||||||| Sbjct 283905 CCCCACTTTCACGGTCTGTATTCA 283882 >seq13 Length=4660326 Score = 320 bits (354), Expect = 3e-85 Identities = 229/264 (87%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3737932 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 3737873 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | Sbjct 3737872 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAACGATAGGAAGAGCCAA 3737813 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||| |||| Sbjct 3737812 CATCGAAGGATCAAACAGCGACGTCTCTATGAACGCTTGGCCGCCACAAGCCAGTYATCC 3737753 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 3737752 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTAAGG 3737693 Query 271 CCACACTTTCATGGTTTGTATTCA 294 || | |||||| |||||||||||| Sbjct 3737692 CCCCGCTTTCACGGTTTGTATTCA 3737669 >seq5234 Length=2346 Score = 295 bits (326), Expect = 1e-77 Identities = 187/203 (92%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| Sbjct 581 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTCATGTTCCCTAT 522 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| Sbjct 521 CAGTGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGAC 462 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| Sbjct 461 ATCGAAGGATCAAAAAGCGATGTCGCTATGAATGCTTGGCTGCCACAAGCCAGTTATCCC 402 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||| || ||| Sbjct 401 TGTGGTAACTTTTCTGACATCTC 379 >seq39 Length=2952422 Score = 132 bits (146), Expect = 8e-29 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 536732 TCATCAGTAGGGTAAAACTAACCTGTCTCATGGAGGTCTAAACCCAGCTCACGTTCCCCA 536673 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 | ||||||||||||||||||||| | Sbjct 536672 TCAGTGGGTGAACAATCCAACGCYT 536648 >seq225 Length=843157 Score = 86.0 bits (94), Expect = 1e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| ||| | ||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 402432 TCATCTGTATGATAAAATTAACCTGTCTCACAACGGTCTAAACCCAGCTCACGTTCCCTT 402373 Query 91 TTAGTGG 97 || |||| Sbjct 402372 TTCGTGG 402366 >seq862 Length=166157 Score = 82.4 bits (90), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||| || |||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 155375 TCCTCATTAAGGTAAAACTAACCTGTCTCACAATGGTCTAAACCCAGCTCACGTTCCCTA 155434 >seq69 Length=2212826 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| || | ||||||||||| | | ||||||||||||||||||||| ||| ||| Sbjct 1766459 TCATCAATACGTGAAAACTAACCTAAGTTACGACGGTCTAAACCCAGCTCACATTCTCTA 1766518 Query 91 TTAGTGGGTGA 101 ||||||||||| Sbjct 1766519 TTAGTGGGTGA 1766529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854145516960