Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq131 77.0 2e-12 seq6709 73.4 2e-11 seq169 71.6 8e-11 >seq131 Length=1538555 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||| ||||| || |||||||||||||||| Sbjct 1290669 CTCACTAAACCATC-CAATCGGTAGTA-GCGACAGGCGGTGTATACAAAGGGCAGGGACT 1290726 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1290727 TAAT-CAACGCGAGCT 1290741 >seq6709 Length=1992 Score = 73.4 bits (80), Expect = 2e-11 Identities = 56/64 (88%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||| |||||| ||||||||||||||||||| Sbjct 1497 CTCACTAAACCATC-CAATCGGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACT 1440 Query 109 TAAT 112 |||| Sbjct 1439 TAAT 1436 >seq169 Length=1117822 Score = 71.6 bits (78), Expect = 8e-11 Identities = 52/58 (90%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||| | ||||||||| ||||||||||||||||||| |||| |||||| |||| Sbjct 903439 TCGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACTTAAT-CAACGCGAGCT 903494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300716006300