Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07-
28] 29,785 sequences; 866,963,281 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq131 77.0 2e-12
seq6709 73.4 2e-11
seq169 71.6 8e-11
>seq131
Length=1538555
Score = 77.0 bits (84), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 1290669 CTCACTAAACCATC-CAATCGGTAGTA-GCGACAGGCGGTGTATACAAAGGGCAGGGACT 1290726
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 1290727 TAAT-CAACGCGAGCT 1290741
>seq6709
Length=1992
Score = 73.4 bits (80), Expect = 2e-11
Identities = 56/64 (88%), Gaps = 2/64 (3%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| |||| |||||| |||||||||||||||||||
Sbjct 1497 CTCACTAAACCATC-CAATCGGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACT 1440
Query 109 TAAT 112
||||
Sbjct 1439 TAAT 1436
>seq169
Length=1117822
Score = 71.6 bits (78), Expect = 8e-11
Identities = 52/58 (90%), Gaps = 2/58 (3%)
Strand=Plus/Plus
Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124
||||||||| | ||||||||| ||||||||||||||||||| |||| |||||| ||||
Sbjct 903439 TCGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACTTAAT-CAACGCGAGCT 903494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300716006300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |