Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq25990 102 8e-20 seq1234 93.3 4e-17 seq768 91.5 2e-16 >seq25990 Length=224 Score = 102 bits (112), Expect = 8e-20 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| |||| |||||| | | | Sbjct 68 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTTGCCTGAATACCGCAGCTAG 127 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | |||||||||||||| ||||| Sbjct 128 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 166 >seq1234 Length=92438 Score = 93.3 bits (102), Expect = 4e-17 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||| ||||||||||||| |||||||||||||| ||| || |||||| | | Sbjct 53775 TTTACTTAGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTTTCCT-GAATACCGCAGCTA 53717 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||| |||| ||||||||| | |||||||||||||| ||||| Sbjct 53716 GGACTAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 53677 >seq768 Length=211953 Score = 91.5 bits (100), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCATG 70 ||||||||| ||||||||||| ||||||||| ||||| | || |||||| | | | Sbjct 17590 TTTACTTTGGAAAAATTAGAGTGTTCAAAGCGGGCCTGGTCGCCTGAATACCGCAGCTAG 17649 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG-TTTCTAGGACCGCCCGTAATGA 129 ||||||| ||||||||| | ||||||| ||||| || ||||| || | | |||| Sbjct 17650 GAATAATGGAATAGGAC-TCTGGTTCTAATTTGTGGGTTTTCTCTGAACTGGGGCCATGA 17708 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 17709 TTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 17764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511852266400