Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq571 544 3e-152 seq279 325 1e-86 seq2478 168 2e-39 seq23548 141 3e-31 seq4316 122 3e-25 seq5234 109 2e-21 seq2 107 6e-21 seq338 102 3e-19 seq1989 100 9e-19 seq11 82.4 2e-13 >seq571 Length=348586 Score = 544 bits (602), Expect = 3e-152 Identities = 444/533 (83%), Gaps = 17/533 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| ||||||||||||||| |||| Sbjct 283849 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGCATTATT 283790 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| ||| ||| ||||||||| ||||||||||||||| || |||| ||||| | Sbjct 283789 GTTTGACAAGTGTACCGCCCCAGTCAAACTCCCCACCTGCCAGTGTC------CCGGAGC 283736 Query 127 GGCCCGCGAAGG-ACCTTAACGCCAGAAAATGGTCGGTGAAGAC-CAGTTCC-GCTTCAT 183 || ||| || || ||| | ||| | || | || | || ||| |||||| Sbjct 283735 GGGTCGCCTTGGCACAAGAAC-CTAGA----GCCCGCTACAGGCTCACCTCCCGCTTCAC 283681 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---CCGAAACGGCTCC 240 | ||||| ||||||||||||| |||||||||||| | |||| ||| | | |||| Sbjct 283680 CGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTTAAATGCGGCCCCGGAGGGTCTCC 283621 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 |||||||||||||||||||| ||| ||||| | ||||||||||||| |||||||| Sbjct 283620 CACTTATTCTACACCTCTCATGTCTCTTCACGCTTGCAGACTAGAGTCAAGATCAACAGG 283561 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 283560 GTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 283501 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 || |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| Sbjct 283500 GAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACAAATTAGATGACGA 283441 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||| Sbjct 283440 GGCATTTGGGTACCTTAAGAGAGTCATAGTTACTTCCGCCATTTACCCGCGCTTCTTTGA 283381 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 283380 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCACCA 283328 >seq279 Length=715161 Score = 325 bits (360), Expect = 1e-86 Identities = 341/444 (77%), Gaps = 22/444 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | |||||| | |||||| ||| Sbjct 590839 CTTCTGCTCCATGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGAAAACCTGCATTACC 590780 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| || ||||| ||||||||||||||| || |||| | | | || Sbjct 590779 GTTTGACAGGTGTACCTCCCCAATCAAACTCCCCACCTGCCAGTGTCCCCGGAGCAGGTC 590720 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAA--AATGGTCGGTGAAGACCAGTT--- 174 | || || | || | ||| | |||||| || | | | || | | || Sbjct 590719 GTGCCCAGCACGTGCCGGGCACTTGGCACCAGAACCAAGAGCCCGCGATGGGC--TTGCC 590662 Query 175 ---CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-- 229 || | ||| | ||| | |||||| ||| || ||||||||||||| ||| | Sbjct 590661 TCCCCACCTCACCGGGTAAATGAAAAAAAGATGAG--TAGTGGTATTTCAAAGGCGGCCC 590604 Query 230 -GAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 | | | ||||||||||||||||||||| || ||| ||||| | |||||||||| Sbjct 590603 TGGAGGGTCTCCCACTTATTCTACACCTCCCATGTCTCTTCACGCTTGCAGACTAGAGTC 590544 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 590543 AAGCTCAACAGGGTCTTCTTTCCCCACTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGT 590484 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 590483 TTCGCTAGATAGGAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCGCGTCACTA 590424 Query 409 ATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||| Sbjct 590423 ATTAGATGACGAGGCATTTGGCTA 590400 Score = 154 bits (170), Expect = 5e-35 Identities = 97/105 (92%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC 488 |||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||| Sbjct 587039 GCTACCTTAAGAAAGTCATAGTTACTCCCGCCATTTTCCCGCGCTTCATTGAATTTCTTC 586980 Query 489 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||| | |||| || Sbjct 586979 ACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGTGTCACCA 586935 Score = 105 bits (116), Expect = 2e-20 Identities = 58/58 (100%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587169 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG 587112 >seq2478 Length=25587 Score = 168 bits (186), Expect = 2e-39 Identities = 99/103 (96%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 7573 TACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCAC 7514 Query 491 TTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||| |||||| || Sbjct 7513 TTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCACCA 7471 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||| ||||| |||||||||||||||||||||||||||||||| || Sbjct 10976 TAGATGACAAGGCAATTGGCTACCTTAAGAGAGTCATAGTTACTCCCTCC 10927 >seq23548 Length=237 Score = 141 bits (156), Expect = 3e-31 Identities = 124/155 (80%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC 234 |||| ||| | ||||| ||||||||||||| ||||| |||||||| | | Sbjct 149 CCGCCTCACCGGATAAGTGAAAAAACGATAAGAGTAGTTGTATTTCAAAGGAGG------ 96 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 | |||||||||||||||||||||||| ||| |||| | |||||||||||||||| Sbjct 95 GTCTCCCACTTATTCTACACCTCTCATGTCTCTTCATGCTTGCAGACTAGAGTCAAGCTC 36 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 ||||||||||||||||||||||||||| ||||||| Sbjct 35 AACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGC 1 >seq4316 Length=2721 Score = 122 bits (134), Expect = 3e-25 Identities = 166/228 (73%), Gaps = 13/228 (6%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 2693 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 2634 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 2633 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCAGTGTCCCCGGAGCGGGTC 2574 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAA--AATGGTCGGTGA-AGAC---CAGT 173 | || |||| || | ||| | |||||| | | | | || || | | Sbjct 2573 GCGCCCAGCACGCGCCGGGCGCTTGGCACCAGAACCGAGAGCCCGCGACAGGCTCGCCTC 2514 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCA 221 |||| ||| | ||||| ||||||||||||| |||||||||||||| Sbjct 2513 CCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCA 2466 >seq5234 Length=2346 Score = 109 bits (120), Expect = 2e-21 Identities = 101/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | | || ||||||| |||| |||| | ||||||||||||||||||| Sbjct 286 CTTCTGCTCCATGGAAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACT 227 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| | ||||| | | ||| || Sbjct 226 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCCGTGTCACCGAAGCGGGTC 167 Query 127 G-GCCCG 132 | ||||| Sbjct 166 GTGCCCG 160 >seq2 Length=10495606 Score = 107 bits (118), Expect = 6e-21 Identities = 105/134 (78%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 301 GTCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||| ||| ||| ||||| || |||| | |||||||||||| |||||| ||| || Sbjct 7876947 GTCTTATTTACCCTGCTGAGTCTGCCATG----TTCCCTTGGCTGAGGTTTCATTAGGTA 7877002 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | | | || ||||||| | ||| ||| |||||||||| || ||||||||| ||||||| Sbjct 7877003 GGGGGTTGGAACAGTGGAACTCTTGTTTGTCCATTCATGTGCATCACTAATTTGATGACG 7877062 Query 420 AGGCATTTGGCTAC 433 | |||||| ||||| Sbjct 7877063 ATGCATTTAGCTAC 7877076 >seq338 Length=730526 Score = 102 bits (112), Expect = 3e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || |||||||| ||| ||||||| |||| |||| | ||||| |||||||||||| | Sbjct 161370 TTCTGCTCTACTAGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAAAACACCTGCGTTACTG 161311 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| ||||| ||| ||||||||||||||| || |||| Sbjct 161310 TTTCACAGGTGTACCGCCTCAGTCAAACTCCCCACCTGCCAGTGTC 161265 >seq1989 Length=37332 Score = 100 bits (110), Expect = 9e-19 Identities = 99/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || ||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 37191 CTTCTGCTCCACGAGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 37250 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||| |||||| |||| || || | |||||| | Sbjct 37251 GTTTGACAGGTGTCCCGCCCCAGTCAACCTCCCCCCCTGCCAGTGCC-----CCCGGAGC 37305 Query 127 GGCCCGCG 134 || |||| Sbjct 37306 GGGTCGCG 37313 >seq11 Length=5004986 Score = 82.4 bits (90), Expect = 2e-13 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 ||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 3441183 TTGAATTTCTTCACTTTGACAGTCAGAGCACTGGGCAGAAATCAAATTGC 3441232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634712955680