Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq975 372 9e-101 seq1234 275 2e-71 seq10515 251 2e-64 seq6786 244 3e-62 seq923 176 1e-41 seq689 167 7e-39 seq10058 143 8e-32 seq77 111 5e-22 seq1231 91.5 4e-16 seq232 91.5 4e-16 >seq975 Length=167842 Score = 372 bits (412), Expect = 9e-101 Identities = 390/507 (77%), Gaps = 13/507 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| |||||| ||||| | ||||||||| Sbjct 83437 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTGCTGTATAGTTATTTTTCGTCACTACC 83496 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 83497 TCCCCGAGTTGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCAT 83556 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||| Sbjct 83557 TTCTCAGGCTTCCTCTCCGGAATCGAACCCTGATTCCCTGTTACCCGTTGTAACCATGGC 83616 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | | ||| |||||||||||| ||||| | | || || | || | | Sbjct 83617 AGGCACGTGGTGTGCCACTGAAAGTTGATAGAGCAGACACTCGACAGACATGTTGCTGCC 83676 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTT 297 || || | ||||| | | | || || || ||||||| ||| || | | Sbjct 83677 ACAGGGGCCAGCGATCGGCTCGAGGTCATCTAGAGTCACCAA--AGC----AACCGTGAG 83730 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 |||||| |||| ||||||||| | | || ||| || || || |||||||||||||| Sbjct 83731 GGTTTTGGATCTGATAAATACATGC---CAGAGGTCAGGCTTGTTCGCATGTATTAGCTC 83787 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 ||||||| |||| |||||||| ||| | |||||| ||| |||| ||| ||| Sbjct 83788 TAGAATTGCCACAGTTATCCAAGTACCGGCGAGTGATCAAAGGAACCTTAACCGATCTAA 83847 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCT 477 | |||||||||||||| ||||||| | || | || |||||| ||||||||||||||| Sbjct 83848 TTAGCCATTCGCAGTTACACTGTACCGGCTGTGTGTAGTTAGACGTGCATGGCTTAATCT 83907 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||| |||||| ||| Sbjct 83908 TTGAGACAAGCATATG-CTACTGACAG 83933 >seq1234 Length=92438 Score = 275 bits (304), Expect = 2e-71 Identities = 380/527 (72%), Gaps = 40/527 (8%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||||||||| |||| ||| || ||||||| | ||||| | ||||||||||| Sbjct 54016 ACTCATTCCAATTACAGGACCTCAAA-AGTCCTGTATTATTATTTTTCATCACTACCTCC 54074 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| | |||| ||||||||||| |||||||||||||||||||||||||| || |||||| Sbjct 54075 CCGAATTGGGAGTGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGATGTGGAAGTCGTTTC 54134 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||| ||||| ||||||| ||||||| |||||||||| ||||||| ||| Sbjct 54135 TCAGGCTCCCTCTCTGGAATTGAACCCTGATTCCCCATTACCCGTTGTAACCATGGCAGG 54194 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 | | | | || |||| ||||| | ||| || ||||| | Sbjct 54195 CATGTGGCGTGCC-----------ATAGAGCAGACACCCGAAAGAGATGTCGCCACCAAG 54243 Query 243 AGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGG------------AGCC--- 285 || | |||||| | | | ||||| || ||||||| | |||| Sbjct 54244 GGGGCTAGCGATTAGCTCGAGGTTATCTAGAGTCACCAAAGCAATGGGGTTATAGCCGGG 54303 Query 286 ---CCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTT 339 || || |||||| |||| || ||| ||| | | || || ||| | | | Sbjct 54304 AGACCACCCCGCAAGGGTTTTAGATCTGATCAATGCACGCATCCCCGGAGGTCAGCGCTC 54363 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || |||||||||||| |||||||| ||| ||||||| ||| | | |||||| Sbjct 54364 GTTTGCATGTATTAGCCCTAGAATTGCCAAAATTATCCAAGTACCGGTGAATGATCAAAG 54423 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAG-ATTGCTTATACTT 457 | | | ||||| ||||||||||||||||| ||||||||||| || || | ||||| Sbjct 54424 GAGCAAAAACTGGTTTAATGAGCCATTCGCGGTTTCACTGTACCAGCCATG--TGTACTT 54481 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||| |||||||||||||||||||||||| |||||||||| Sbjct 54482 AGATGTGCATGCCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 54527 >seq10515 Length=1590 Score = 251 bits (278), Expect = 2e-64 Identities = 273/360 (76%), Gaps = 24/360 (7%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 1229 TATTTTTCGTCACTACCTCCCCGTGTCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCC 1288 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1289 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTC 1348 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||||| ||||||| |||| | | | ||||||||||||||||| ||||| | | | Sbjct 1349 CCCGTTGTAACCATGGCAGGCACGTGGCGTGCCATCGAAAGTTGATAGAGCAGACACTCG 1408 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAG 280 || || ||||| | || || || ||||| | | ||||| || ||||||| Sbjct 1409 AAAGAGATGTCGCCACCACAGGGGCAGGCGATCGGCCCGAGGTTATCTAGAGTCACCAAA 1468 Query 281 G------AGCC---CCGAAGGG----------CGTTGGTTTTTTATCTAATAAA--TACA 319 | || | || | ||| || | |||| |||| ||||| || Sbjct 1469 GCTTCCAAGGCAGACCCAGGGGGTCCGCCCCACGAGGCTTTTGGATCTGATAAACGCACG 1528 Query 320 CCCCTTCCGAAGTC-GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCA 378 | ||| | || ||| | | | || ||||||||||||||||||||| |||| |||||||| Sbjct 1529 CACCTCCGGAGGTCAGCGCTCGTTTGCATGTATTAGCTCTAGAATTGCCACAGTTATCCA 1588 >seq6786 Length=1976 Score = 244 bits (270), Expect = 3e-62 Identities = 278/371 (75%), Gaps = 29/371 (8%) Strand=Plus/Plus Query 71 GGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 130 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC 60 Query 131 CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATC 190 |||||||||||||||||||| |||||||||||||||||| ||||||| |||| | | Sbjct 61 CCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGTAACCATGGCAGGCACGTGGC 120 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATG 250 | ||||||||||||||||| ||||| | | ||| || | |||||| | | || | | Sbjct 121 GTGCCATCGAAAGTTGATAGAGCAGACACTCGAAAGAGACGTCGCCGCCACGGGGGCCAG 180 Query 251 CGATTCGTT--AAGTTATTATGAATCACCAA------------GGAGCCCCGAAG----- 291 |||| | | | ||||| || ||||||| ||||||| | | Sbjct 181 CGATCTGCTCGAGGTTATCTAGAGTCACCAAAGCATCCGGGGCGGAGCCCGGGGGCCCAC 240 Query 292 --GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCA 346 || | |||||| |||| |||||| ||| | | || || ||| | | | || ||| Sbjct 241 CCCGCATGGGTTTTGGATCTGATAAATGCACGCATCCCCGGAGGTCAGCGCTCGTTTGCA 300 Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATAAAC 403 |||||||||||||||||| |||| ||| |||| ||| | ||| | |||||| ||| Sbjct 301 TGTATTAGCTCTAGAATTGCCACAGTTGTCCAAGTA--ACGGTCGAGCGATCAAAGGAAC 358 Query 404 GATAACTGATT 414 |||||||||| Sbjct 359 CATAACTGATT 369 >seq923 Length=195030 Score = 176 bits (194), Expect = 1e-41 Identities = 168/210 (80%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-GAAG-TCGGGGTTT-TTAGCATGTATTAG 354 |||||| |||| |||||| ||| | | || |||| || | | | || ||||||||||| Sbjct 47478 GGTTTTGGATCTGATAAATGCACGCATCCCCGAAGGTCAGCGCTCGTTTGCATGTATTAG 47537 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||| |||| |||||||| ||| | | |||||| ||| |||||||||| Sbjct 47538 CTCTAGAATTGCCACAGTTATCCAAGTAACGGCGAGCGATCAAAGGAACCATAACTGATT 47597 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||||||||||||||||| | | | |||||||| |||||||||||| Sbjct 47598 TAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGATGTGCATGGCTTAA 47657 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| ||| |||||||||| Sbjct 47658 ACTTTGAGACAAGCAAATG-CTACTGGCAG 47686 >seq689 Length=283669 Score = 167 bits (184), Expect = 7e-39 Identities = 132/157 (84%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||| ||||||||||| |||| |||||||| ||| | | |||||| ||| ||| Sbjct 61643 GTATTGGCTCTAGAATTGCCACAGTTATCCAAGTAACGGCGAGCGATCAAAGGAACCATA 61584 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||||||||||||||||||||||||||||||| | | | ||||||||||||||| Sbjct 61583 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACATGCAT 61524 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| |||||||||||||||||| |||||||||| Sbjct 61523 GGCTTAAACTTTGAGACAAGCATATG-CTACTGGCAG 61488 >seq10058 Length=1616 Score = 143 bits (158), Expect = 8e-32 Identities = 120/146 (82%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||| |||| |||||||| ||| | || |||||| ||| |||||||||||||| Sbjct 1 AGAATTGCCACAGTTATCCAAGTAACGGCGAACGATCAAAGGAACCATAACTGATTTAAT 60 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||||| ||| | | | |||||||||||||||||||| | ||| Sbjct 61 GAGCCATTCGCAGTTTCACAGTACCGGCCGTGTGTACTTAGACATGCATGGCTTCAACTT 120 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| ||||||||| Sbjct 121 TGAGACAAGCATATG-TTACTGGCAG 145 >seq77 Length=1965722 Score = 111 bits (122), Expect = 5e-22 Identities = 129/170 (76%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG---TAAGGTACTAT 394 || ||||||||||||||||||| |||| | || || |||| || |||| | || Sbjct 1287721 TTGTTAGCATGTATTAGCTCTAAAATTGCAACAGTCTTCCAGCAAGAATTAAG---CGAT 1287777 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| | | ||||| |||||||||||||||| || |||| || | | || | | Sbjct 1287778 CAAAGGACC-ATAACAGATTTAATGAGCCATTTGCGGTTTTGCTTTGCCAACTGTGTGTG 1287836 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| ||||||||||||||| | ||||||||||||| |||||||||| Sbjct 1287837 CTTAGATTTGCATGGCTTAATCTGTAAGACAAGCATATG-CTACTGGCAG 1287885 >seq1231 Length=79442 Score = 91.5 bits (100), Expect = 4e-16 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||| | | ||||| ||| Sbjct 65396 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATCTTTCGTCACAACC 65337 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 |||||| ||||| | ||||||||||| || ||||| Sbjct 65336 TCCCCGAGTCGGTAGTGGGTAATTTGTGCACCTGC 65302 >seq232 Length=874276 Score = 91.5 bits (100), Expect = 4e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||| |||||||||||| | |||||||||| |||||||| |||||||||| ||||||| Sbjct 563725 TTTCCCAGGCTCCCTCTACATAATCGAACCCCAATTCCCCATTACCCGTTGCCACCATGG 563784 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||| | | | ||||| ||||||||||| | ||| Sbjct 563785 CAGGCACGTGGCGTGCCATCAAAAGTTGATAGAGTAGA 563822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509950127360