Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq345 246 2e-60 seq2653 123 2e-23 seq558 118 8e-22 >seq345 Length=614307 Score = 246 bits (272), Expect = 2e-60 Identities = 400/566 (71%), Gaps = 10/566 (2%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC-GGTATACTCGACAATTTCGGTGCA 66072 ||||| || ||||| || || | |||||| || || ||| || || || | || ||||| Sbjct 403869 GATGCCAGATTGCAAACTGCCACCTCGTC-GGCGCTGGTGTATTCCACGACCTCCGTGCA 403811 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATC 66132 || || ||||| |||||||||| |||||| || || ||||| | ||||| || || Sbjct 403810 CAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTC 403751 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 ||||||| ||||||||| || |||||||| |||||||| |||||||||| |||||| Sbjct 403750 TTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAG 403691 Query 66193 AGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTC-GTAGAGGT 66251 | || |||||| ||| | |||| |||| ||||| ||| ||| || | Sbjct 403690 CTGCTGAGCTTTCACCACACGCTTCACCCTCCCTTCCTTCTCGTA-TGTAGTGTACAGCT 403632 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311 || || || ||||| ||| || | ||||||| || ||||||||||| | Sbjct 403631 TCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAG 403572 Query 66312 ACCAATCACCATCCTGTTCTACAC--GACGCATAAATAGATCAGGTATCCAGAGGGCGTA 66369 |||| || | || ||| ||| | ||| || || || || ||||| ||||| || Sbjct 403571 ACCAGTCCTGGT--TGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATA 403514 Query 66370 GAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACT 66428 ||| || || | |||| |||||||| |||| ||| || || || || ||||| | Sbjct 403513 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTG-TTCTTCTTCAGCTCTAGGAAGT 403455 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||| | ||| |||||| || |||| ||| |||||||| | || | |||| || Sbjct 403454 CAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGC 403395 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 ||||||| ||||||||||||||| |||||| | || | || ||| || || ||||||| Sbjct 403394 CACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGT 403335 Query 66549 TAGATTTGCCATTGGTGCCGTCGATG 66574 | || || || ||||| ||| ||||| Sbjct 403334 TGGAGTTCCCGTTGGTACCGGCGATG 403309 >seq2653 Length=13515 Score = 123 bits (136), Expect = 2e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| | ||||||||||| || | ||||| | ||||||||||||||||||| Sbjct 11105 TGGAGCGTTTCTCTCAGGAGGTGCAGGTCCCAGAGGCCAGGTGTTTCTACGGCTTCCAGA 11164 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||| ||||| ||||||| ||||||||||| | || ||||| || ||||||| || Sbjct 11165 TCGCCATAGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 11224 Query 61376 AGC 61378 ||| Sbjct 11225 AGC 11227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || |||||||| ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 10754 GACAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 10813 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| || || ||||||||||||||||||||||| Sbjct 10814 AAGCAGGCTGAGGCCTCCTTCTGGACGGTGGAGGAGGT 10851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 61483 GGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCC 61542 || || || ||| |||| || || | || ||||| | || ||| || ||||| ||| Sbjct 11483 GGAGAGCGTTTGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCC 11542 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTG 61602 | ||||| ||||||||||| || || || ||||||||||||||||||||||| ||| | Sbjct 11543 TCCATCTTCTGGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 11602 Query 61603 AT-ATCACGCGACGAGG 61618 || | || | ||||||| Sbjct 11603 ATCAGCA-GAGACGAGG 11618 >seq558 Length=349536 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| || || ||| | ||||| | ||||||||||||||||||| Sbjct 126876 TGGAGCGCTTCACACAGGAAGTCCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGA 126817 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| || ||||||| || Sbjct 126816 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 126757 Query 61376 AGC 61378 ||| Sbjct 126756 AGC 126754 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || |||||||| ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 127245 GACAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 127186 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||||||||||| ||||||||| Sbjct 127185 AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 127148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||| || ||||| ||| | ||||| | Sbjct 123879 TGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCCTCCATCTTCT 123820 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611 |||||||||| || || || ||||||||||||||||||||||| ||| | || | || | Sbjct 123819 GGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCA-GA 123761 Query 61612 GACGAGG 61618 ||||||| Sbjct 123760 GACGAGG 123754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397423680952400