Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq236 86.0 3e-11 >seq236 Length=939572 Score = 86.0 bits (94), Expect = 3e-11 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || |||| || |||||| | |||||| || | || ||||| | | |||||| Sbjct 21208 CTCGATCAGCATGCCGATGGTCATCCTGGACGGGAAGCCGTGGGGGTTGAACAGGATGTC 21149 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 || | | |||| | | |||| ||||||||||||| | | ||| ||||| | | Sbjct 21148 CGGGGACATGCCGCTCTCCGTGAACGGCATGTCCTCGGCG--GGCCA-CAGGCGGCTCAG 21092 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || ||||||||| || ||||||||| ||||||||| || Sbjct 21091 GATGCCCTTCTGACCYTGGCGGCTGGCGAACTTGTCACC 21053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2083924216813430