Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq6658 167 4e-39 seq11159 123 5e-26 >seq6658 Length=7564740 Score = 167 bits (184), Expect = 4e-39 Identities = 210/282 (74%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 7562050 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 7562109 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 7562110 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 7562168 Query 156 TCTATTTTGTTGGTTT----CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 7562169 TCTATTTTGTGGGTTTTCTTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGC 7562228 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| | |||||||||||||||||| ||||| || | ||||| Sbjct 7562229 ATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAA 7562288 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| || ||||| |||||||||||||||| |||||||||| Sbjct 7562289 AGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 7562329 >seq11159 Length=3978678 Score = 123 bits (136), Expect = 5e-26 Identities = 200/282 (71%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||| ||||| Sbjct 3901820 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTACAGTGT 3901879 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||||||| | || |||||| | | |||||||| ||||||||| | ||| Sbjct 3901880 TCAAAGCAGGCCTGGTCGCCTGAATACCGCAACTAGGAATAATGGAATAGGAC-TCTGGT 3901938 Query 156 TCTATTTTGTTGGTTT------CTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 ||||||||| |||| ||| || | | ||||||| ||||| |||| | Sbjct 3901939 CCTATTTTGTGAGTTTTCTTCTCTAA-ACTGGGGCCATGATTATGAGGGACGACCGGGTG 3901997 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | |||| || |||||||||||||||||| | ||||| | | |||| Sbjct 3901998 CATTCATATTGTGCTGCTAGAGGTGAAATTCTTGGACTGGCGCAAGACGGATGAAAGCGA 3902057 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 |||| || ||| | |||||||||||||||| ||| ||||| Sbjct 3902058 AAGCATTTGCCACGAATGTTTTCATTAATCA-AGAATGAAAG 3902098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915047893760