Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4807 100 5e-19 seq1999 82.4 1e-13 seq11603 77.0 5e-12 >seq4807 Length=20766 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 3641 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCTTGGCTGAGGAGCCAAT 3698 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 3699 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3752 >seq1999 Length=1773313 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| |||| || | |||||| | ||||| | || | || |||| || || | Sbjct 1626646 GTACGAGAAGAACTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGACTGAGGAGCCAAT 1626703 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| |||||||| |||||||||||||| ||| ||||| Sbjct 1626704 GGTGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCACAATCC 1626757 >seq11603 Length=3851240 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 1329471 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCTTGGCTGAGGAGCCAAT 1329414 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| ||||||| |||||| |||||| |||||| ||| Sbjct 1329413 GGTGTGAAGCTACCATCTGTAAGATTATGACTGAACACCTCTATGTCAGAGTCC 1329360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819068103680