Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9898 228 6e-55 seq9943 125 6e-24 >seq9898 Length=4754808 Score = 228 bits (252), Expect = 6e-55 Identities = 616/937 (66%), Gaps = 14/937 (1%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||| || || ||| |||| ||| || | ||| ||||| |||| ||| || ||| Sbjct 100763 ACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACGGCTACCTCATCTTTGCTTGTA 100704 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| ||||| || ||||||| |||||||| || |||||||||||||| |||||| Sbjct 100703 TACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATAGTGCCCAAATTCTGCTGATTA 100644 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| | || || ||||| ||||||| |||||| ||||| || || ||| || ||| Sbjct 100643 CTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTTTCAGTCTGAGAC 100584 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT 66232 || |||||||| | ||| | | ||||| ||| ||| | | || |||| | Sbjct 100583 TCTATGATGGCATACCACACCTGCTGAGCCTTGACCACCCGTTTCACTCTGCCTTCCTGC 100524 Query 66233 TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACAC 66292 ||||| | ||| || | || || || ||||| || ||| | || ||| Sbjct 100523 TCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAGCCCAGGGCAC 100464 Query 66293 TTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCA 66352 | || ||||||| ||||| || | | ||| || | ||| || | |||| Sbjct 100463 TCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAAATCA 100404 Query 66353 GGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTT 66411 || ||||| ||||| |||||||| || ||||| | |||||||| | || ||| || || Sbjct 100403 GGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTG-TTCTT 100345 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 || || ||||| ||||| | ||| |||||||| || ||||| ||||| || | Sbjct 100344 CTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCAAGGTACATGGCAAAGGC 100285 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 || ||||| |||||||||||| |||||||| || |||||| | || | || Sbjct 100284 ACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCGCGCCGTGTTGTTGTACACCCTCAG 100225 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCG 66591 ||| || || || || || || || ||||| || || | ||| | |||| || | Sbjct 100224 CATTGGCACAAGGCCATTTGAATTACCATTTGTTCCAGCAATGTAGCTTCCTGTTGATCT 100165 Query 66592 TATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC 66651 || | ||| | |||||| || || || | || |||||| ||| || | Sbjct 100164 AATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTGGAGATGAGAGCGCATTGTTT 100105 Query 66652 CACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACT 66711 | ||| | ||||| |||||| |||| |||| |||| ||| ||| ||| |||| Sbjct 100104 GAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGC---AACT 100048 Query 66712 A---AGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA 66768 | || || ||| || ||| | || ||| || ||||| | || || || || | Sbjct 100047 AGAGAGCTGTGGTCTGTTGGTGCCTGCATTGAACAGAGTGGGAGAGGCATGAGTGAACCA 99988 Query 66769 ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGT---TTTCGCCATGAAT 66825 | ||||| ||||| ||||| ||| | |||||||| | ||| | || || Sbjct 99987 CTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCAATATCAGTTTTG---TGGAT 99931 Query 66826 CCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATG 66885 || | || || ||| || | || || || || || ||| | | ||||| | Sbjct 99930 TCCAACAGCTACTCTCATGAGCATGTGCTGTGGACGCTCAGCCACCTTGCCATTGATTTT 99871 Query 66886 CATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 || | ||||||||| || |||||||| | |||||| Sbjct 99870 CAGCAGGTAGGAGCGCTCTAGGGTCTTAAAGCCAAAG 99834 >seq9943 Length=499256 Score = 125 bits (138), Expect = 6e-24 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||||||| ||| ||||||| | |||||||| || ||||||| Sbjct 291024 TGGAGCGCTTCATGCAGGAGGTGCAGGTGACGGAGGCCAGATGTTTCTATGGGTTCCAGA 291083 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 | ||||||||||| ||||||| |||||||||||| | |||||||| || ||||||| Sbjct 291084 TCGCCATGGAGAACATCCACTCAGAGATGTACAGTCTGCTCATCGACACCTACATCA 291140 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 61723 CAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATG 61782 ||||| || ||||| || |||||||||||| ||||||||| ||||| |||| || ||| Sbjct 292946 CAGGAGTTCCTGACGGAGGCTTTGCCCGTCAAACTCATCGGGATGAACTGTGACCTCATG 293005 Query 61783 TCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 |||||| || || ||||| |||||||| || || |||| Sbjct 293006 AAGCAGTACATCGAGTTTGTGGCCGACCGACTTCTGCTCGA 293046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397487470116800