Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6082 161 1e-37 seq3334 73.4 6e-11 >seq6082 Length=3521834 Score = 161 bits (178), Expect = 1e-37 Identities = 197/258 (76%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 3189766 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 3189709 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 3189708 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCAATCACGAGTGGGGTTCAGCGGGTT 3189649 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGC 178 ||||| ||||||||| || | | || || ||| | || | | ||| |||||||||| Sbjct 3189648 ACCCGCGCCTGTCGGCGCAGAGTAGACACACGCTGA-TCCACCCATTGTGGCGCGCGTGC 3189590 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||| | |||||||||||||||||||||||||||||| ||| | || ||||| ||||| Sbjct 3189589 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGG-CTAAA 3189532 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 3189531 CGCCACTTGTCCCTCTAA 3189514 >seq3334 Length=24670 Score = 73.4 bits (80), Expect = 6e-11 Identities = 146/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Minus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 || || || | || ||||| ||| | |||||||||| |||||| ||| ||||| | || Sbjct 17633 ACTTAATCCAGGCAAGCTT-ATGTCCCGCGCTTACTGGGAATT-CCTTGTTGATGGGAAA 17576 Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGG 134 | || |||| | |||| || || | |||| | ||||||| ||||||| Sbjct 17575 TAGTTTCAATCCCCAGTCCCAATGACAAGTGGGGTTCAGCGGGTTACCCGCGCCTGTCGT 17516 Query 135 C-CA-AGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGCGGCCCAGAACATC 191 | || || ||| | || | ||| | || | | ||| ||||| | || |||| | ||||| Sbjct 17515 CGCAGAGTTGACACACGC--TGA-TCCACCCATTGTGGCGCGGGGGCAGCCCCGGACATC 17459 Query 192 TAAGGGCATCACAGACCTGTTATTGC 217 || ||| ||||||||||||||||||| Sbjct 17458 TAGGGGGATCACAGACCTGTTATTGC 17433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751949624225