Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq6082 161 1e-37
seq3334 73.4 6e-11
>seq6082
Length=3521834
Score = 161 bits (178), Expect = 1e-37
Identities = 197/258 (76%), Gaps = 8/258 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| |
Sbjct 3189766 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 3189709
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||||| | || | || |||| | |||| ||||||| |||| | ||
Sbjct 3189708 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCAATCACGAGTGGGGTTCAGCGGGTT 3189649
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGC 178
||||| ||||||||| || | | || || ||| | || | | ||| ||||||||||
Sbjct 3189648 ACCCGCGCCTGTCGGCGCAGAGTAGACACACGCTGA-TCCACCCATTGTGGCGCGCGTGC 3189590
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238
|||| | |||||||||||||||||||||||||||||| ||| | || ||||| |||||
Sbjct 3189589 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGG-CTAAA 3189532
Query 239 AGGC-CATCTCCCTCGAA 255
| | | | |||||| ||
Sbjct 3189531 CGCCACTTGTCCCTCTAA 3189514
>seq3334
Length=24670
Score = 73.4 bits (80), Expect = 6e-11
Identities = 146/206 (71%), Gaps = 9/206 (4%)
Strand=Plus/Minus
Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75
|| || || | || ||||| ||| | |||||||||| |||||| ||| ||||| | ||
Sbjct 17633 ACTTAATCCAGGCAAGCTT-ATGTCCCGCGCTTACTGGGAATT-CCTTGTTGATGGGAAA 17576
Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGG 134
| || |||| | |||| || || | |||| | ||||||| |||||||
Sbjct 17575 TAGTTTCAATCCCCAGTCCCAATGACAAGTGGGGTTCAGCGGGTTACCCGCGCCTGTCGT 17516
Query 135 C-CA-AGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTGCGGCCCAGAACATC 191
| || || ||| | || | ||| | || | | ||| ||||| | || |||| | |||||
Sbjct 17515 CGCAGAGTTGACACACGC--TGA-TCCACCCATTGTGGCGCGGGGGCAGCCCCGGACATC 17459
Query 192 TAAGGGCATCACAGACCTGTTATTGC 217
|| ||| |||||||||||||||||||
Sbjct 17458 TAGGGGGATCACAGACCTGTTATTGC 17433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751949624225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |