Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6082 233 3e-59 seq4711 145 1e-32 seq3334 114 2e-23 seq3635 89.7 8e-16 >seq6082 Length=3521834 Score = 233 bits (258), Expect = 3e-59 Identities = 204/250 (82%), Gaps = 14/250 (6%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 3189606 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 3189548 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATAGTCG 135 | | || ||||| | |||| | |||||||||||||| | | || |||| || Sbjct 3189547 ATC-TCGCGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGAAACGCCGACCA----CG 3189493 Query 136 ATGGG-------GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | ||| |||||||||| | |||||||||||||||||||||||||||||| Sbjct 3189492 AGGGGCCGCGTAACTATTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACA 3189433 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 3189432 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTA 3189373 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 3189372 TCAATCTGTC 3189363 >seq4711 Length=1183 Score = 145 bits (160), Expect = 1e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || || |||||||||||| ||||||||||||||| |||||||||||||||| ||||||| Sbjct 635 GTGTCATTCGTTATCGGACTTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGT 694 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 695 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 734 >seq3334 Length=24670 Score = 114 bits (126), Expect = 2e-23 Identities = 156/213 (73%), Gaps = 15/213 (7%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| ||||| | || |||| | ||||||| ||| ||||||||||||||||||| || Sbjct 17488 CATTGTGGCGCGGGGGCAGCCCCGGACATCTAGGGGGATCACAGACCTGTTATTGC-TCC 17430 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCT-AAGAAGCC-AGCCACCAACCATAGTC 134 | || | | |||| | ||| | |||||| | |||||| | | || |||| | Sbjct 17429 ATCTCGCCT-GGCTAAACACCACTTGTCCCTTTTAAGAAGTTGAAACGCCGACCA----C 17375 Query 135 GATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || ||| | |||||||| | |||||| || |||||| || ||||||||| Sbjct 17374 GAGGGGCCGCGTAACTATTTAGCTTGGAGGAGTCTCGATCATTATCGAAAATAACCAGAC 17315 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCAC 220 ||||| |||||||||||| |||||||||||||| Sbjct 17314 AAATCGCTCCACCAACTACGAACGGCCATGCAC 17282 >seq3635 Length=151079 Score = 89.7 bits (98), Expect = 8e-16 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 ||| ||| || ||| |||| | |||||||||||||||||||||||||||||| ||| | | Sbjct 111492 TGTGGCGTGCTTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATC 111550 Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | || ||||| | |||| | |||||||||||||| Sbjct 111551 TCGCA-TGGCTAAACGCCACTTGTCCCTCTAAGAAG 111585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796746623115