Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq6082 233 3e-59
seq4711 145 1e-32
seq3334 114 2e-23
seq3635 89.7 8e-16
>seq6082
Length=3521834
Score = 233 bits (258), Expect = 3e-59
Identities = 204/250 (82%), Gaps = 14/250 (6%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| |||||||||| |||| | |||||||||||||||||||||||||||||| |||
Sbjct 3189606 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 3189548
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATAGTCG 135
| | || ||||| | |||| | |||||||||||||| | | || |||| ||
Sbjct 3189547 ATC-TCGCGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGAAACGCCGACCA----CG 3189493
Query 136 ATGGG-------GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
| ||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct 3189492 AGGGGCCGCGTAACTATTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACA 3189433
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
|||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 3189432 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTA 3189373
Query 249 TCAATCTGTC 258
||||||||||
Sbjct 3189372 TCAATCTGTC 3189363
>seq4711
Length=1183
Score = 145 bits (160), Expect = 1e-32
Identities = 92/100 (92%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|| || |||||||||||| ||||||||||||||| |||||||||||||||| |||||||
Sbjct 635 GTGTCATTCGTTATCGGACTTAACCAGACAAATCGCTCCACCAACTAAGAATGGCCATGT 694
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||| |||||| |||||||||||||||||||||
Sbjct 695 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 734
>seq3334
Length=24670
Score = 114 bits (126), Expect = 2e-23
Identities = 156/213 (73%), Gaps = 15/213 (7%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76
|| ||| ||||| | || |||| | ||||||| ||| ||||||||||||||||||| ||
Sbjct 17488 CATTGTGGCGCGGGGGCAGCCCCGGACATCTAGGGGGATCACAGACCTGTTATTGC-TCC 17430
Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCT-AAGAAGCC-AGCCACCAACCATAGTC 134
| || | | |||| | ||| | |||||| | |||||| | | || |||| |
Sbjct 17429 ATCTCGCCT-GGCTAAACACCACTTGTCCCTTTTAAGAAGTTGAAACGCCGACCA----C 17375
Query 135 GATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
|| ||| | |||||||| | |||||| || |||||| || |||||||||
Sbjct 17374 GAGGGGCCGCGTAACTATTTAGCTTGGAGGAGTCTCGATCATTATCGAAAATAACCAGAC 17315
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCAC 220
||||| |||||||||||| ||||||||||||||
Sbjct 17314 AAATCGCTCCACCAACTACGAACGGCCATGCAC 17282
>seq3635
Length=151079
Score = 89.7 bits (98), Expect = 8e-16
Identities = 79/96 (82%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79
||| ||| || ||| |||| | |||||||||||||||||||||||||||||| ||| | |
Sbjct 111492 TGTGGCGTGCTTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATC 111550
Query 80 TTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
| || ||||| | |||| | ||||||||||||||
Sbjct 111551 TCGCA-TGGCTAAACGCCACTTGTCCCTCTAAGAAG 111585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796746623115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |