Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6082 161 2e-37 seq3635 82.4 1e-13 >seq6082 Length=3521834 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 3189510 CTTCTTAGAGGGACAAGTGGCGTTTAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 3189567 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 3189568 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGTGGATCAGCGTGTGTCTAC 3189627 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 3189628 TCTGCGCCGACAGGCGCGGGTAACCCGCTGAACCCCACTCGTGATTGGGACTGGGGATTG 3189687 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 3189688 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 3189747 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 3189748 AAGTCCCTGCCCTTTGTA 3189765 >seq3635 Length=151079 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| ||| || | ||| |||||||||||||||| Sbjct 111585 CTTCTTAGAGGGACAAGTGGCGTTTAGCC-ATGCGAGATGGAG-CAATAACAGGTCTGTG 111528 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166 |||||||||||||| | |||| ||| || ||| ||| Sbjct 111527 ATGCCCTTAGATGTCCGGGGCTGCAAGCACGCCACA 111492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947134501120