Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq6082 161 2e-37
seq3635 82.4 1e-13
>seq6082
Length=3521834
Score = 161 bits (178), Expect = 2e-37
Identities = 193/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 3189510 CTTCTTAGAGGGACAAGTGGCGTTTAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 3189567
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||| ||| || | || || || |
Sbjct 3189568 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGTGGATCAGCGTGTGTCTAC 3189627
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| |||| ||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 3189628 TCTGCGCCGACAGGCGCGGGTAACCCGCTGAACCCCACTCGTGATTGGGACTGGGGATTG 3189687
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || |||||||||| ||||| ||| ||||||||||
Sbjct 3189688 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 3189747
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 3189748 AAGTCCCTGCCCTTTGTA 3189765
>seq3635
Length=151079
Score = 82.4 bits (90), Expect = 1e-13
Identities = 78/96 (81%), Gaps = 3/96 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| ||| || | ||| ||||||||||||||||
Sbjct 111585 CTTCTTAGAGGGACAAGTGGCGTTTAGCC-ATGCGAGATGGAG-CAATAACAGGTCTGTG 111528
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166
|||||||||||||| | |||| ||| || ||| |||
Sbjct 111527 ATGCCCTTAGATGTCCGGGGCTGCAAGCACGCCACA 111492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947134501120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |