Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq908 563 3e-158 seq3696 554 1e-155 seq4994 324 4e-86 seq4192 257 5e-66 seq6836 159 1e-36 seq2812 114 4e-23 seq2436 114 4e-23 seq3645 87.8 6e-15 seq3021 82.4 2e-13 >seq908 Length=47660 Score = 563 bits (624), Expect = 3e-158 Identities = 454/547 (83%), Gaps = 20/547 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| ||| | ||||||||||||||||||| Sbjct 35020 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCCGAGCTCGCCTTAGGACACCTGCGTTACA 35079 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 35080 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 35139 Query 127 G--GCCCGCGAAGGACC---------TTAACGCCAGAA---AATGGTCGGTGAAGACCAG 172 | ||||| || | | || || |||||| | | || | | | | Sbjct 35140 GCGGCCCGGGATCGCTCCCGCGCCGCTTGACACCAGAAGCGAGAGCCCGCCGGGGGCTCG 35199 Query 173 TT---CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-- 227 |||| ||| | ||||| | |||||||||| ||||||||||||||| ||| Sbjct 35200 CCTCCCCGCCTCACCGGGTAAGTGAGGAAACGATAAGAGTAGTGGTATTTCACCGGCGGT 35259 Query 228 -CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286 ||||| | ||||||||||||||||||| |||| ||| |||||| | | |||||||| Sbjct 35260 CCCGAAGGGCCTCCCACTTATTCTACACCCCTCATGTCTCTTCACAGTGCCAGACTAGAG 35319 Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 35320 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTG 35379 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 35380 GTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCAC 35439 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35440 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 35499 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 35500 CCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGC 35559 Query 527 GTCAACA 533 ||||||| Sbjct 35560 GTCAACA 35566 >seq3696 Length=222198 Score = 554 bits (614), Expect = 1e-155 Identities = 452/547 (83%), Gaps = 20/547 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| ||| | ||||||||||||||||||| Sbjct 12219 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCCGAGCTCGCCTTAGGACACCTGCGTTACA 12160 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 12159 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 12100 Query 127 G--GCCCGCGAAGGACC---------TTAACGCCAGAA---AATGGTCGGTGAAGACCAG 172 | ||||| || | | || || |||||| | | || | | | | Sbjct 12099 GCGGCCCGGGATCGCTCCCGCGCCGCTTGACACCAGAAGCGAGAGCCCGCCGGGGGCTCG 12040 Query 173 TT---CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-- 227 |||| ||| | ||||| | |||||||||| ||||||||||||||| ||| Sbjct 12039 CCTCCCCGCCTCACCGGGTAAGTGAGGAAACGATAAGAGTAGTGGTATTTCACCGGCGGT 11980 Query 228 -CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286 ||||| | ||||||||||||||||||| |||| ||| |||||| | | |||||||| Sbjct 11979 CCCGAAGGGCCTCCCACTTATTCTACACCCCTCATGTCTCTTCACAGTGCCAGACTAGAG 11920 Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 11919 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTG 11860 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 ||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 11859 GTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCAC 11800 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 11799 TAATTAGATGACGAGGCATTTTGCTACCTTAAGAGAGTCATAGTTGCTCCCGCCGTTTAC 11740 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11739 CCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 11680 Query 527 GTCAACA 533 ||||||| Sbjct 11679 GTCAACA 11673 >seq4994 Length=820280 Score = 324 bits (358), Expect = 4e-86 Identities = 241/280 (86%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT--TGCGCCGAAAC 234 || |||| | ||||| | |||||||||| ||| ||||||||||| || || || Sbjct 62550 GCCTCATCGGGTAAGTGAGGAAACGATAAGAGTAATGGTATTTCACCACTGGTCCTGAAG 62491 Query 235 GGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 ||| |||||||||||||||||| ||| ||| |||||| | | |||||||| | |||| Sbjct 62490 GGCCTCCCACTTATTCTACACCCTTCATGTCTCTTCACAGTGCCAGACTAGAGCCCAGCT 62431 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 62430 CAACAGGGTGTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGC 62371 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 || ||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||| Sbjct 62370 TAAATAGTAGGAAGGGACAGTGGGAATCTTGTTCATCTATTCATGCGCGTCACTAATTAG 62311 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTAC 453 ||||||||||||||||||||||||||||||||||||| || Sbjct 62310 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTAAC 62271 >seq4192 Length=1177517 Score = 257 bits (284), Expect = 5e-66 Identities = 172/193 (89%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||||| ||||||| ||| |||||||||||||| |||| | ||||||||||||| Sbjct 748839 GCTGTGGTTTCTCTAGATAATAGGTAGGGACAGTGGGAGTCTCATATATCCATTCATGCG 748780 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 748779 CGTCACTAATTAGATGACCAGGCATTTGGCTACCTTAAGAGACTCATAGTTACTCCCGCC 748720 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 748719 GTTTACCCGCGCTTCATTGAATTTCTTCACTTT--------GAGCACTGGGCAGAAATCA 748668 Query 521 CATTGCGTCAACA 533 ||| || |||||| Sbjct 748667 CATCGCATCAACA 748655 >seq6836 Length=1529 Score = 159 bits (176), Expect = 1e-36 Identities = 155/197 (79%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---CCGAAACGGCTCCCACT 244 ||||| | |||||||||| ||||||||||||||| || ||||| | |||||||| Sbjct 1444 TAAGTGAGGAAACGATAAGAGTAGTGGTATTTCACCGGCCGTCCCGAAGGGCCTCCCACT 1385 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||| ||||| |||| || ||||| | | ||||||||||||||| || ||||||| Sbjct 1384 TATTTAACACCCCTCATGTGTCCTCACAGTGCCAGACTAGAGTCAAGCTAAATAGGGTCT 1325 Query 305 TCTTTCCC---CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 | ||| || | |||||| |||| |||| || |||||||||||||||| || |||||| Sbjct 1324 TTTTTTCCCTTCTTTGATTCTGCCATGCCCATT-CCTTGGCTGTGGTTTCACTGGATAGT 1266 Query 362 AGATAGGGACAGTGGGA 378 || |||||||||| ||| Sbjct 1265 AGGTAGGGACAGTTGGA 1249 >seq2812 Length=19100 Score = 114 bits (126), Expect = 4e-23 Identities = 102/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| ||| | ||||||||||||||||||| Sbjct 1485 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCCGAGCTCGCCTTAGGACACCTGCGTTACA 1426 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 1425 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC-----CCCGGAGC 1371 Query 127 GGCCCGCG 134 || |||| Sbjct 1370 GGGTCGCG 1363 >seq2436 Length=1507172 Score = 114 bits (126), Expect = 4e-23 Identities = 102/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| ||| | ||||||||||||||||||| Sbjct 55217 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCCGAGCTCGCCTTAGGACACCTGCGTTACA 55158 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 55157 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC-----CCCGGAGC 55103 Query 127 GGCCCGCG 134 || |||| Sbjct 55102 GGGTCGCG 55095 >seq3645 Length=2014916 Score = 87.8 bits (96), Expect = 6e-15 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAG-TCCCCCTTAGGACACCTGCGTTAT 65 ||| ||||| || ||| || |||| |||| | || || || | |||||||||||||| Sbjct 1633675 CTTCTGCTCCACGGGACGTTCCTGTCCTCCCTAAGCTCGTCCCTGGGACACCTGCGTTAC 1633734 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||| |||| ||| ||||||||| ||||||||||||||| Sbjct 1633735 TGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTG 1633774 >seq3021 Length=1423706 Score = 82.4 bits (90), Expect = 2e-13 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 21 GAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTG 80 ||| ||||||| |||| || | || ||||||||| ||||| |||| |||| ||| Sbjct 313101 GAGGTTTCTGTCCTCCCCAAGCTCGCCAAAGGACACCTCCGTTACAGTTTGACAGGTGTA 313160 Query 81 CCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||| ||||||||||||||| || |||| Sbjct 313161 CCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 313193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635086925920