Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3696 118 2e-24 seq2436 118 2e-24 seq2396 118 2e-24 seq908 118 2e-24 seq3312 102 1e-19 seq508 89.7 8e-16 seq4915 87.8 3e-15 seq2122 78.8 2e-12 seq3485 73.4 6e-11 >seq3696 Length=222198 Score = 118 bits (130), Expect = 2e-24 Identities = 101/122 (83%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| |||| || |||| || || | Sbjct 12544 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 12601 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| Sbjct 12602 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 12661 Query 121 GA 122 || Sbjct 12662 GA 12663 >seq2436 Length=1507172 Score = 118 bits (130), Expect = 2e-24 Identities = 101/122 (83%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| |||| || |||| || || | Sbjct 55542 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 55599 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| Sbjct 55600 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 55659 Query 121 GA 122 || Sbjct 55660 GA 55661 >seq2396 Length=1438751 Score = 118 bits (130), Expect = 2e-24 Identities = 96/114 (84%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||||| |||| || |||| || || | Sbjct 1029028 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTGTGCGCTTGGCTGAGGAGCCACT 1028971 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1028970 GGTGCGAAGCTACCATCTGCAGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1028917 >seq908 Length=47660 Score = 118 bits (130), Expect = 2e-24 Identities = 101/122 (83%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| |||| || |||| || || | Sbjct 34695 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 34638 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| Sbjct 34637 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 34578 Query 121 GA 122 || Sbjct 34577 GA 34576 >seq3312 Length=723950 Score = 102 bits (112), Expect = 1e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||| | | ||||||| |||| || |||| || || | Sbjct 315283 GTACGAGAGGAACCACAGGTTTCAACAAATTTGGTTTGTGCGCTTGGCTGAGGAGCCACT 315342 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || |||||||||| ||| |||||||| |||||||||||||||| ||||||| Sbjct 315343 GGTGCAAAGCTACCATTTGCGGGATTATGACTGAACGCCTCTAAGTGAGAATCC 315396 >seq508 Length=140044 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||||| | || |||| |||| || |||| || || | Sbjct 1393 GTACGAGAGGAACCGCAGG-TTCAGGC-ATTTAGTTTGTGCGCTTGGCTGAGGAGCCACT 1336 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||||| ||||||| ||||||| |||| | |||||| | | ||| Sbjct 1335 GGTGCGAAGCTACCATCTGCGGGATTATTACTGAACGTCTCTGAAGCAGAATTCCTCCCA 1276 Query 121 GAA 123 ||| Sbjct 1275 GAA 1273 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/74 (82%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39 TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGC 98 |||| || |||| || || || ||||||||||||||||| |||||||| |||||||| Sbjct 1272 TGCGTTTGGCTGAGGAGCCACTGGTGCGAAGCTACCATCTGCAGGATTATGACTGAACGC 1213 Query 99 CTCTAAGTCAGAAT 112 |||||| |||||| Sbjct 1212 CTCTAAAGCAGAAT 1199 >seq4915 Length=59900 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||||| | || |||| || | || |||| || || | Sbjct 44221 GTACGAGAGGAACCGCAGG-TTCAGGC-ATTTAGTTTGTGAGCTTGGCTGAGGAGCCACT 44164 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||||| ||||||| |||||||||||| | |||||| | | ||| Sbjct 44163 GGTGCGAAGCTACCATCTGCGGGATTATTACTGAACGCCTCTGAAGCAGAATTCCTCCCA 44104 Query 121 GA 122 || Sbjct 44103 GA 44102 >seq2122 Length=112700 Score = 78.8 bits (86), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || ||| | |||| | |||| || |||| || || | Sbjct 28577 GTACGAGAGGAACCGCAGGTTT-AGAC-ATTTGGCTCATGCGCTTGGCTGAGGAGCCACT 28634 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||||||| |||||||| |||||| |||||| | ||||| | ||| Sbjct 28635 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACAACTCTAA-AAAAAATCCCTCCCA 28693 Query 121 GA 122 || Sbjct 28694 GA 28695 >seq3485 Length=1842445 Score = 73.4 bits (80), Expect = 6e-11 Identities = 91/122 (75%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| |||| | | | |||| | |||||| ||| || ||| || | | Sbjct 180974 GTACGAGAGAAACCTCAGG-TACAGAC-ATTTGGTTCATGCACTTGGGTGAGGAGCCGCT 180917 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||| |||| |||||| ||||||||| ||||| |||||||||||| ||||| | ||| Sbjct 180916 GGTGCGAGGCTATCATCTGATGGATTATGACTGAATGCCTCTAAGTCAAAATCCCTCCCA 180857 Query 121 GA 122 || Sbjct 180856 GA 180855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819145122560