Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq3696 118 2e-24
seq2436 118 2e-24
seq2396 118 2e-24
seq908 118 2e-24
seq3312 102 1e-19
seq508 89.7 8e-16
seq4915 87.8 3e-15
seq2122 78.8 2e-12
seq3485 73.4 6e-11
>seq3696
Length=222198
Score = 118 bits (130), Expect = 2e-24
Identities = 101/122 (83%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | |||||| |||| || |||| || || |
Sbjct 12544 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 12601
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct 12602 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 12661
Query 121 GA 122
||
Sbjct 12662 GA 12663
>seq2436
Length=1507172
Score = 118 bits (130), Expect = 2e-24
Identities = 101/122 (83%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | |||||| |||| || |||| || || |
Sbjct 55542 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 55599
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct 55600 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 55659
Query 121 GA 122
||
Sbjct 55660 GA 55661
>seq2396
Length=1438751
Score = 118 bits (130), Expect = 2e-24
Identities = 96/114 (84%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||||| |||| || |||| || || |
Sbjct 1029028 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTTGTGCGCTTGGCTGAGGAGCCACT 1028971
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1028970 GGTGCGAAGCTACCATCTGCAGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1028917
>seq908
Length=47660
Score = 118 bits (130), Expect = 2e-24
Identities = 101/122 (83%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | |||||| |||| || |||| || || |
Sbjct 34695 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 34638
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct 34637 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCTCCCA 34578
Query 121 GA 122
||
Sbjct 34577 GA 34576
>seq3312
Length=723950
Score = 102 bits (112), Expect = 1e-19
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||| | | |||| | | ||||||| |||| || |||| || || |
Sbjct 315283 GTACGAGAGGAACCACAGGTTTCAACAAATTTGGTTTGTGCGCTTGGCTGAGGAGCCACT 315342
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| || |||||||||| ||| |||||||| |||||||||||||||| |||||||
Sbjct 315343 GGTGCAAAGCTACCATTTGCGGGATTATGACTGAACGCCTCTAAGTGAGAATCC 315396
>seq508
Length=140044
Score = 89.7 bits (98), Expect = 8e-16
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||||| | || |||| |||| || |||| || || |
Sbjct 1393 GTACGAGAGGAACCGCAGG-TTCAGGC-ATTTAGTTTGTGCGCTTGGCTGAGGAGCCACT 1336
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||||||||| ||||||| ||||||| |||| | |||||| | | |||
Sbjct 1335 GGTGCGAAGCTACCATCTGCGGGATTATTACTGAACGTCTCTGAAGCAGAATTCCTCCCA 1276
Query 121 GAA 123
|||
Sbjct 1275 GAA 1273
Score = 75.2 bits (82), Expect = 2e-11
Identities = 61/74 (82%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 39 TGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGC 98
|||| || |||| || || || ||||||||||||||||| |||||||| ||||||||
Sbjct 1272 TGCGTTTGGCTGAGGAGCCACTGGTGCGAAGCTACCATCTGCAGGATTATGACTGAACGC 1213
Query 99 CTCTAAGTCAGAAT 112
|||||| ||||||
Sbjct 1212 CTCTAAAGCAGAAT 1199
>seq4915
Length=59900
Score = 87.8 bits (96), Expect = 3e-15
Identities = 94/122 (77%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||||| | || |||| || | || |||| || || |
Sbjct 44221 GTACGAGAGGAACCGCAGG-TTCAGGC-ATTTAGTTTGTGAGCTTGGCTGAGGAGCCACT 44164
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||||||||| ||||||| |||||||||||| | |||||| | | |||
Sbjct 44163 GGTGCGAAGCTACCATCTGCGGGATTATTACTGAACGCCTCTGAAGCAGAATTCCTCCCA 44104
Query 121 GA 122
||
Sbjct 44103 GA 44102
>seq2122
Length=112700
Score = 78.8 bits (86), Expect = 2e-12
Identities = 93/122 (76%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | || ||| | |||| | |||| || |||| || || |
Sbjct 28577 GTACGAGAGGAACCGCAGGTTT-AGAC-ATTTGGCTCATGCGCTTGGCTGAGGAGCCACT 28634
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||||||||||| |||||||| |||||| |||||| | ||||| | |||
Sbjct 28635 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACAACTCTAA-AAAAAATCCCTCCCA 28693
Query 121 GA 122
||
Sbjct 28694 GA 28695
>seq3485
Length=1842445
Score = 73.4 bits (80), Expect = 6e-11
Identities = 91/122 (75%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||| |||| | | | |||| | |||||| ||| || ||| || | |
Sbjct 180974 GTACGAGAGAAACCTCAGG-TACAGAC-ATTTGGTTCATGCACTTGGGTGAGGAGCCGCT 180917
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||| |||| |||||| ||||||||| ||||| |||||||||||| ||||| | |||
Sbjct 180916 GGTGCGAGGCTATCATCTGATGGATTATGACTGAATGCCTCTAAGTCAAAATCCCTCCCA 180857
Query 121 GA 122
||
Sbjct 180856 GA 180855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819145122560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |