Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq5816 253 6e-65
seq3548 91.5 4e-16
>seq5816
Length=117332
Score = 253 bits (280), Expect = 6e-65
Identities = 318/432 (74%), Gaps = 42/432 (10%)
Strand=Plus/Minus
Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT 171
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 3974 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTC 3915
Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231
|||||||||||| | | ||||||||||||||||||||||||| ||| ||| || |
Sbjct 3914 ACCATGGTAGGCGCCGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAAAGACACG 3855
Query 232 TCGCCGGCTCA-AGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCG 288
|||||| | | ||| | ||||| | | ||||| || ||||||| | | |||
Sbjct 3854 TCGCCGCCGCCGAGGGCGCGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCGGACCG 3795
Query 289 AAG------GGC-----GTTGGTTTTTT--ATCTAATAAATACACCCCTTCCGAAGTC-- 333
| ||| | ||| ||||| |||| |||||| ||| | | ||| || |
Sbjct 3794 GGGACACGAGGCCCCCGGATGGGTTTTTGGATCTGATAAATGCACGCAT-CCGCAGCCCC 3736
Query 334 --------GGGG-----------TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374
|||| | || ||||||||||||||| ||||| |||| ||||
Sbjct 3735 CCGTGAAGGGGGCCAGTCAGCGCTCGTTTGCATGTATTAGCTCTGGAATTGCCACAGTTA 3676
Query 375 TCCATGTA--GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGT 432
|||| ||| | || | |||||| ||| ||||||||||||||||||||||||||||
Sbjct 3675 TCCAAGTACGGGTGGGAGCGATCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGT 3616
Query 433 TTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492
|||||||| | | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 3615 TTCACTGT-CACGCCGTGTGCACTTAGACCTGCATGGCTTAATCTTTGAGACAAGCATAT 3557
Query 493 GACTACTGGCAG 504
| |||||||||
Sbjct 3556 G-TTACTGGCAG 3546
>seq3548
Length=3773714
Score = 91.5 bits (100), Expect = 4e-16
Identities = 90/114 (79%), Gaps = 3/114 (3%)
Strand=Plus/Minus
Query 393 ATCAAATAAACGATAACTGATTT--AATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450
||| || |||| | |||||| | |||||||||||| | ||||||||||| | |
Sbjct 7256 ATCCAAGAAACCAGAACTGAATGTAAATGAGCCATTCACTGTTTCACTGTACCGGCCACA 7197
Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| |||||||| |||||||||| |||||| ||||||||||||| |||||||||
Sbjct 7196 TGCACTTAGACCTGCATGGCTTGATCTTTCGGACAAGCATATGA-TACTGGCAG 7144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510295555840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |