Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5816 253 6e-65 seq3548 91.5 4e-16 >seq5816 Length=117332 Score = 253 bits (280), Expect = 6e-65 Identities = 318/432 (74%), Gaps = 42/432 (10%) Strand=Plus/Minus Query 112 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT 171 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 3974 GTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTC 3915 Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 |||||||||||| | | ||||||||||||||||||||||||| ||| ||| || | Sbjct 3914 ACCATGGTAGGCGCCGAAAGTACCATCGAAAGTTGATAGGGCAGACATTCGAAAGACACG 3855 Query 232 TCGCCGGCTCA-AGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGAGCCCCG 288 |||||| | | ||| | ||||| | | ||||| || ||||||| | | ||| Sbjct 3854 TCGCCGCCGCCGAGGGCGCGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCGGACCG 3795 Query 289 AAG------GGC-----GTTGGTTTTTT--ATCTAATAAATACACCCCTTCCGAAGTC-- 333 | ||| | ||| ||||| |||| |||||| ||| | | ||| || | Sbjct 3794 GGGACACGAGGCCCCCGGATGGGTTTTTGGATCTGATAAATGCACGCAT-CCGCAGCCCC 3736 Query 334 --------GGGG-----------TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 |||| | || ||||||||||||||| ||||| |||| |||| Sbjct 3735 CCGTGAAGGGGGCCAGTCAGCGCTCGTTTGCATGTATTAGCTCTGGAATTGCCACAGTTA 3676 Query 375 TCCATGTA--GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGT 432 |||| ||| | || | |||||| ||| |||||||||||||||||||||||||||| Sbjct 3675 TCCAAGTACGGGTGGGAGCGATCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGT 3616 Query 433 TTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||| | | | |||||||| |||||||||||||||||||||||||||||| Sbjct 3615 TTCACTGT-CACGCCGTGTGCACTTAGACCTGCATGGCTTAATCTTTGAGACAAGCATAT 3557 Query 493 GACTACTGGCAG 504 | ||||||||| Sbjct 3556 G-TTACTGGCAG 3546 >seq3548 Length=3773714 Score = 91.5 bits (100), Expect = 4e-16 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 393 ATCAAATAAACGATAACTGATTT--AATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 ||| || |||| | |||||| | |||||||||||| | ||||||||||| | | Sbjct 7256 ATCCAAGAAACCAGAACTGAATGTAAATGAGCCATTCACTGTTTCACTGTACCGGCCACA 7197 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||| |||||||||| |||||| ||||||||||||| ||||||||| Sbjct 7196 TGCACTTAGACCTGCATGGCTTGATCTTTCGGACAAGCATATGA-TACTGGCAG 7144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510295555840