Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3182 105 5e-18 >seq3182 Length=3053334 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| | ||||| ||||| || | ||||| ||||| ||||| |||||||||| Sbjct 800878 TGGAGCGTTTTTCCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCAGA 800937 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| |||| || ||||||||||| | || || || || ||||||| || Sbjct 800938 TCGCCATGGAGAACATCCATTCTGAGATGTACAGCTTGCTTATTGACACTTACATCAAGG 800997 Query 61376 A 61376 | Sbjct 800998 A 800998 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| ||||| | ||||| ||||| || | ||||| ||||| ||||| |||||||||| Sbjct 883790 TGGAGCGTTTTTCCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCAGA 883849 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| |||| || ||||||||||| | || || || || ||||||| || Sbjct 883850 TCGCCATGGAGAACATCCATTCTGAGATGTACAGCTTGCTTATTGACACTTACATCAAGG 883909 Query 61376 A 61376 | Sbjct 883910 A 883910 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || || | ||||| ||||| || | ||||| ||||| ||||| |||||||||| Sbjct 790746 TGGAGCGGTTTACCCAGGAAGTGCAGGTCACCGAGGCACGTTGCTTCTATGGCTTCCAGA 790805 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| |||| || ||||||||||| | || || || || ||||||| || Sbjct 790806 TCGCCATGGAGAACATCCATTCTGAGATGTACAGCTTGCTTATTGACACTTACATCAAGG 790865 Query 61376 A 61376 | Sbjct 790866 A 790866 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || || | ||||| ||||| || | ||||| ||||| ||||| |||||||||| Sbjct 800042 TGGAGCGGTTTACCCAGGAAGTGCAGGTCACAGAGGCACGTTGCTTCTATGGCTTCCAGA 800101 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| |||| || ||||||||||| | || || || || ||||||| || Sbjct 800102 TCGCCATGGAGAACATCCATTCTGAGATGTACAGCTTGCTTATTGACACTTACATCAAGG 800161 Query 61376 A 61376 | Sbjct 800162 A 800162 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| ||||| |||||||| | || |||||||| |||||||| || || ||||||||| Sbjct 792000 AACCCCTTTGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAA 792059 Query 61915 CGTGTAGGCGACTATCAACGTTTGGGTGT 61943 |||||||| || || ||| | ||||||| Sbjct 792060 CGTGTAGGAGAGTACCAAAGGATGGGTGT 792088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAA 61914 ||||| ||||| |||||||| | || |||||||| |||||||| || || ||||||||| Sbjct 885192 AACCCCTTTGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAA 885251 Query 61915 CGTGTAGGCGACTATCAACGTTTGGGTGT 61943 |||||||| || || ||| | ||||||| Sbjct 885252 CGTGTAGGAGAGTACCAAAGGATGGGTGT 885280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534494335600