Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2058 113 2e-19 seq4270 95.1 5e-14 seq5217 89.7 2e-12 >seq2058 Length=4615884 Score = 113 bits (124), Expect = 2e-19 Identities = 122/159 (77%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| | |||| || ||||||||| |||||| || |||| ||||| | | |||||| Sbjct 2816779 CTCGATGAGCATGCCGATGGTCATGCGGGACGGGAAGCCATGGGGGTTGAACAGGATGTC 2816720 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 ||| ||| |||| | | |||||||||||||||| ||| | ||| ||||| | | Sbjct 2816719 GGGAGTCATGCCGCTCTCACTGAAGGGCATGTCCTC--GGTCGGCCA-CAGGCGGCTCAA 2816663 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || |||||||||||||||||||||| |||||||| || Sbjct 2816662 GATGCCCTTCTGGCCGTGGCGGCTGGCAAACTTGTCGCC 2816624 >seq4270 Length=1144238 Score = 95.1 bits (104), Expect = 5e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || |||||||||| | ||||| |||||||| | |||| ||| || || || Sbjct 316479 GGCGTTGATGATCTCCTTGATGCGGGGCACACCCAGGGTGATGTTCATGGAGGCTACTCC 316420 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 || ||||||||||||| |||||||| ||||||| ||||| || |||| |||| Sbjct 316419 AGCGAAGTGGAAGGTCTTGAGGGTCATCTGCGTGCCCGGCTCCCCAATGCTCTGG 316365 >seq5217 Length=1178167 Score = 89.7 bits (98), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||||| ||||| || ||||||||||||| |||||||| | ||||| Sbjct 140421 CTCCTTGAGACGGGGCACACCCAGCGTGACGTTCTTGGCCGACACGCCGGCGTAATGGAA 140362 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||||||| ||| ||| ||||| || | ||||| | || ||| || || Sbjct 140361 GGTGTTCAGGGTCATCTGGGTGGCAGGCTCTCCCAGAGACTGGGCAGCCAGGGCACCAAC 140302 Query 349204 CATCTCGCCGGG 349215 |||||| || || Sbjct 140301 CATCTCACCCGG 140290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084549990373170