Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq1950 172 2e-38 >seq1950 Length=44673 Score = 172 bits (190), Expect = 2e-38 Identities = 274/390 (70%), Gaps = 5/390 (1%) Strand=Plus/Minus Query 33547 TGCTGCCTTT-GCTGCGGGCT---ATCATCGCGCTTACCGCCAATCATTTGCATCACACC 33602 || ||| ||| ||||| || | || ||| |||| | || | ||| ||||| |||| Sbjct 25202 TGGTGCTTTTCGCTGCTGGATTCCATTATCTTGCTTGCTACCCAACATCTGCATTACACA 25143 Query 33603 ACCCATTTGCTGGATAACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCA 33662 | | | ||| | |||||||||||| ||||| | || ||| | || | ||| Sbjct 25142 ATCAAAACCCTGTAAAACAATTTCTGTAGTGTACTGATCTTGACCATCTTTGTTTTGCCA 25083 Query 33663 TTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACC 33722 ||| | || |||||| ||| |||| |||||||| |||||||| | || || ||||| Sbjct 25082 TTTACGCGTTTGCAACTTACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACC 25023 Query 33723 AGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTT 33782 ||||||||||| ||||| ||||||| | | || ||||||||||| |||| || |||| Sbjct 25022 GGCAATTTCAGCTAGCTTTCCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTG 24963 Query 33783 CTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGC 33842 ||| ||||| |||||| ||||| ||| ||||| || | | | ||| ||||| || Sbjct 24962 CTCGCCAGTGTTCTTATCTTTCCAGCTTTCTGATGTTGCCAACGTAAAGTTAGCAACTGC 24903 Query 33843 GCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTAC 33902 ||| ||| | || | | ||||| || || | || | |||| | ||||||| | Sbjct 24902 GCCACCACTAGGTAAACACTTAACTTCAGGATCGTTACCAAGATTGCCAATGATGATTGC 24843 Query 33903 TTTATTTACGCCGCGAGTTGCCAT-TTATT 33931 |||||| | |||||| | ||||| ||||| Sbjct 24842 TTTATTGATTCCGCGACTCGCCATGTTATT 24813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144960895467920