Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq96570 127 3e-27 seq65212 100 5e-19 seq133007 86.0 1e-14 seq116670 84.2 4e-14 seq64216 77.0 6e-12 >seq96570 Length=4321 Score = 127 bits (140), Expect = 3e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| Sbjct 3738 CGGTCTAAACCCAGCTCACGTTCCCTATCAGTGGGTGAACAGTCCAACGCTTGGTGAATT 3797 Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||||||| ||| | ||||||||||||||||||| Sbjct 3798 CTGCTTCACGATGTTGGGAAGAGCCGACATCGAAG 3832 >seq65212 Length=8416 Score = 100 bits (110), Expect = 5e-19 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT 114 ||||||||| | ||||| |||||||||| ||| |||| ||||||||| |||||||||||| Sbjct 7256 GTCTCATGATGCTCTAATCCCAGCTCACTTTCTCTATAAGTGGGTGACCAATCCAACGCT 7197 Query 115 TACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 | | ||||| ||||| ||| ||||| |||| || || |||||||||| Sbjct 7196 TGGCAAATTCGGCTTCACAGTGAGAGGAAAAGCCAACCCTTGAGAATCAAAAAGC 7142 >seq133007 Length=6977 Score = 86.0 bits (94), Expect = 1e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3845 CGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 3796 >seq116670 Length=10358 Score = 84.2 bits (92), Expect = 4e-14 Identities = 95/126 (75%), Gaps = 5/126 (4%) Strand=Plus/Minus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||| ||| ||||||| || || | ||||| ||||||||||||| | ||| || Sbjct 4032 GACAGTCAAAACCCATCTT--GTGC---ATTAGCAGGTGAACAATCCACCACTTGATGAG 3978 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| || | | |||||||||||||| || ||||||||| |||| | |||| Sbjct 3977 TTCTGCTTCACAATAACAAGAAGAGCCGACATCACAGCATCAAAAAGGGACGTTGGTATG 3918 Query 182 AACGCT 187 |||||| Sbjct 3917 AACGCT 3912 >seq64216 Length=26834 Score = 77.0 bits (84), Expect = 6e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCAC 82 |||||||||||||||||||||| ||||||| |||||||||| |||||| ||| Sbjct 21514 TCATCAGTAGGGTAAAACTAACTTGTCTCACGACGGTCTAATCCCAGCCCAC 21565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852992863008