Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq137229 199 3e-46 seq51583 127 2e-24 seq55784 113 4e-20 >seq137229 Length=11157 Score = 199 bits (220), Expect = 3e-46 Identities = 381/557 (68%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || || |||||||| |||| |||||| | ||| || || |||||||| ||||| Sbjct 2230 GAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAG 2289 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| | |||||||||| |||||| || || ||||| || ||||| || || Sbjct 2290 AGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCT 2349 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||||| |||||| || || || || || ||||||||||| ||||| ||||| | Sbjct 2350 TTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACC 2409 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTA--ATGTTCGTAGAGGT 66251 | ||||||||| ||| |||| || | || || | || |||||| | Sbjct 2410 TGTTGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGT--GTAGAGCT 2467 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311 ||| || || ||||| ||| ||| | || |||| || ||||||||||| | Sbjct 2468 TTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAG 2527 Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 |||| || | ||||| | ||| || || ||||| ||||| | | |||||| Sbjct 2528 ACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGA 2587 Query 66372 AGAGATCGCGTGCTCGTTGCTCCT-CAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 | || || | |||| ||||||| | | ||||| || || || || ||||| ||| Sbjct 2588 AAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCA 2646 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 || | || ||||| || || ||||| |||||||| | || | ||| ||| Sbjct 2647 AACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCA 2706 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 || ||||| || || || || ||||||| | || | || ||| || ||||||||||| Sbjct 2707 CCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTG 2766 Query 66551 GATTTGCCATTGGTGCC 66567 || ||||| |||||||| Sbjct 2767 GAGTTGCCGTTGGTGCC 2783 >seq51583 Length=2687 Score = 127 bits (140), Expect = 2e-24 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| || ||||||||||| ||||||| Sbjct 1379 TGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGGTTCCAGA 1320 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||| || Sbjct 1319 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTCATCAACACCTACATCAAGG 1260 Query 61376 AGC 61378 ||| Sbjct 1259 AGC 1257 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104 || ||||| || ||||| | ||||||||| ||||| | || || |||| |||||||| Sbjct 1791 AACCCTCGGCGCTTCGTCATCTTCCCCATCAAGTATCACGACATCTGGCAGATGTACAAG 1732 Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 ||||| || || ||||||||||| | |||||||| Sbjct 1731 AAGGCAGAGGCCTCCTTCTGGACCGCAGAGGAGGT 1697 >seq55784 Length=9571 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| |||||| || Sbjct 2615 GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 2674 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || || ||||| || || Sbjct 2675 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTCTGTCTGA 2734 Query 66170 GACTCAATGATGGCGTGCCA 66189 |||||||||||||||||||| Sbjct 2735 GACTCAATGATGGCGTGCCA 2754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396770003125520