Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02]
164,693 sequences; 563,609,416 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq137229 199 3e-46
seq51583 127 2e-24
seq55784 113 4e-20
>seq137229
Length=11157
Score = 199 bits (220), Expect = 3e-46
Identities = 381/557 (68%), Gaps = 6/557 (1%)
Strand=Plus/Plus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
|| || || |||||||| |||| |||||| | ||| || || |||||||| |||||
Sbjct 2230 GAGGCCAGATTGCAGACGGCTACCTCGTCGTGGCTGGTGTATTCAACAATTTCTGTGCAG 2289
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133
|| || ||| | |||||||||| |||||| || || ||||| || ||||| || ||
Sbjct 2290 AGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCGGTTGCAGGCGTCT 2349
Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193
||||||| |||||| || || || || || ||||||||||| ||||| ||||| |
Sbjct 2350 TTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCAATAATGGCATGCCACACC 2409
Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTA--ATGTTCGTAGAGGT 66251
| ||||||||| ||| |||| || | || || | || |||||| |
Sbjct 2410 TGTTGAGCCTTCACCACACGCTTGACCCTCCCGTCCTTCTCATAGGAGGT--GTAGAGCT 2467
Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311
||| || || ||||| ||| ||| | || |||| || ||||||||||| |
Sbjct 2468 TTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATCAGAG 2527
Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371
|||| || | ||||| | ||| || || ||||| ||||| | | ||||||
Sbjct 2528 ACCAGTCTTGGTTGCCCTCTACTCTCTTCATGAACAGGTCAGGGATCCACATGCCGTAGA 2587
Query 66372 AGAGATCGCGTGCTCGTTGCTCCT-CAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430
| || || | |||| ||||||| | | ||||| || || || || ||||| |||
Sbjct 2588 AAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCA 2646
Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490
|| | || ||||| || || ||||| |||||||| | || | ||| |||
Sbjct 2647 AACACATCAAAGTGCCAGGGCTCTAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTCCCA 2706
Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550
|| ||||| || || || || ||||||| | || | || ||| || |||||||||||
Sbjct 2707 CCCTGGTCCACATAACGTGCCGTATTGTTGTAAACTCTCAGCATGGGGACGAGCCCGTTG 2766
Query 66551 GATTTGCCATTGGTGCC 66567
|| ||||| ||||||||
Sbjct 2767 GAGTTGCCGTTGGTGCC 2783
>seq51583
Length=2687
Score = 127 bits (140), Expect = 2e-24
Identities = 102/123 (83%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| ||||||| || ||||||||||| |||||||
Sbjct 1379 TGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGGTTCCAGA 1320
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||| ||
Sbjct 1319 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTCATCAACACCTACATCAAGG 1260
Query 61376 AGC 61378
|||
Sbjct 1259 AGC 1257
Score = 82.4 bits (90), Expect = 6e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 61045 AATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAA 61104
|| ||||| || ||||| | ||||||||| ||||| | || || |||| ||||||||
Sbjct 1791 AACCCTCGGCGCTTCGTCATCTTCCCCATCAAGTATCACGACATCTGGCAGATGTACAAG 1732
Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139
||||| || || ||||||||||| | ||||||||
Sbjct 1731 AAGGCAGAGGCCTCCTTCTGGACCGCAGAGGAGGT 1697
>seq55784
Length=9571
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109
|| ||||| || || || ||||||||||| ||| | |||||||||| |||||| ||
Sbjct 2615 GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 2674
Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169
|| ||||| | ||||| || |||||||| | |||||| || || ||||| || ||
Sbjct 2675 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTCTGTCTGA 2734
Query 66170 GACTCAATGATGGCGTGCCA 66189
||||||||||||||||||||
Sbjct 2735 GACTCAATGATGGCGTGCCA 2754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396770003125520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |