Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq67842 89.7 2e-12 seq135297 86.0 3e-11 >seq67842 Length=11392 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || ||| || ||||||||| || ||| || | || ||||| | | |||||| Sbjct 4562 CTCGATCAGCATCCCGATGGTCATGCGAGAGGGGAAGCCGTGGGGGTTGAACAGGATGTC 4503 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 ||||| | |||| | | |||||||||||||||||| | | ||| ||||| | Sbjct 4502 GGGCGCCATGCCGCTCTCTGTGAAGGGCATGTCCTCGGCG--GGCCA-CAGGCGACTCAG 4446 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || ||| ||||| |||||||||||| |||||||| || Sbjct 4445 GATGCCTTTCTGACCGTGGCGGCTGGCAAACTTGTCGCC 4407 >seq135297 Length=20122 Score = 86.0 bits (94), Expect = 3e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || ||||| |||| | |||| ||||| || | |||| ||| ||| || || Sbjct 6782 GGCGTTGATGATCTCTTTGATGCGAGGCACCCCCAGAGTGATGTTCATGGACGCCACACC 6841 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||||||||||||||| | ||||||| ||| ||| ||||| ||||||| |||| Sbjct 6842 GGCAAAGTGGAAGGTTTTCAGGGTCATCTGAGTGCCAGGCTCCCCGATGCTCTGG 6896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2080232836866014