Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1 140 5e-31 seq21 129 9e-28 >seq1 Length=34528841 Score = 140 bits (154), Expect = 5e-31 Identities = 155/203 (76%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 16 ACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAA 75 || ||||||||||||||||| |||| |||||||||| ||| ||||||||||| | | Sbjct 33214517 ACTTAGTCAACGCGAGCTTG-TGACCCGCGCTTACTTGGA-TTTCCTCGTTGGCGGGGGA 33214460 Query 76 CAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGG 134 | || ||| | ||||||||||| ||| || ||||||| ||| |||| Sbjct 33214459 AAGTTTCAACCCCCGGGCCCCATCACGAGCGGGGCTCAGAGGGTTACCCGCGCCTCTCGG 33214400 Query 135 CCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 | |||| | | || || ||| | |||||||||||| |||||||||| | |||||||| Sbjct 33214399 CGAAGGGTAGACACACGCTGACTCGGTCAGTGTAGCGCTCGTGCGGCCCCGTACATCTAA 33214340 Query 195 GGGCATCACAGACCTGTTATTGC 217 ||||||||||||||||||||||| Sbjct 33214339 GGGCATCACAGACCTGTTATTGC 33214317 >seq21 Length=16446795 Score = 129 bits (142), Expect = 9e-28 Identities = 165/225 (73%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||| ||| Sbjct 3472167 GTACAAAGGGCAGGGACTTAGTCAACGCGAGCTTG-TGACCCGCGCTTACTGTGAA-TTC 3472224 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||| ||| | | | || ||| | |||||||||||| | ||| | || Sbjct 3472225 CTCATTGGCGGGGGAAAGTTTCAACCCCCGGTCCCCATCACGAGCAGGGCTCAGCGGGTT 3472284 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || | ||| || || |||| | | || || ||| | ||||||||||||||||||| Sbjct 3472285 TCCTGCGCCTCTCAGCAAAGGGTAGACACACGCTGACTCAGTCAGTGTAGCGCGCGTGCG 3472344 Query 180 GCCCAGAACATCTAAGG---------GCATCACAGACCTGTTATT 215 |||| | |||||||||| ||||||||||||||||||| Sbjct 3472345 GCCCCGGACATCTAAGGAACATCTAAGCATCACAGACCTGTTATT 3472389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751784050745