Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq6330 233 4e-59 seq76 104 4e-20 seq21 95.1 2e-17 >seq6330 Length=582 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 511 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 452 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 451 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 393 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 392 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 333 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 332 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 274 Query 311 GTTAGGGG 318 ||| |||| Sbjct 273 GTTGGGGG 266 >seq76 Length=38394 Score = 104 bits (114), Expect = 4e-20 Identities = 168/234 (72%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 84 AAAAATTAGAGTGTTCAAAGCAGGCC----TTTGCTCGAATAC-ATTAGCATGGAATAAT 138 |||||| ||||||||||||||||||| |||| |||| | ||| |||||||| Sbjct 340 AAAAATCAGAGTGTTCAAAGCAGGCCCCCAGTTGCCTGAATTCTCGCAGCTAGGAATAAT 281 Query 139 AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGG 197 ||||||||| ||| |||||||||||||||| | || || | |||||| | ||| Sbjct 280 GGAATAGGAC-CCCGGCTCTATTTTGTTGGTTT---GAACTCGGGGCCATGATTGAGAGG 225 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 | | |||||| | ||| | | |||||||||||||||||| |||||| Sbjct 224 AACGGCCGGGGGCATTCGTACTGTGCCGCTAGAGGTGAAATTCTTGGA-CCGGCGAAGAC 166 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||| ||| |||| || ||||| |||||||||||| ||| ||||||||| Sbjct 165 GGCCTAAAGCGTAAGCATTTGCCAAGAATGTTTTCATTAGTCA-AGAACGAAAG 113 >seq21 Length=16446795 Score = 95.1 bits (104), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 93 AGTGTTCAAAGCAGGCCT----TTGCTCGAATACATT-AGCATGGAATAATAGAATAGGA 147 ||||||||||||||||| |||| |||| | ||| |||||||| |||||||| Sbjct 3473106 AGTGTTCAAAGCAGGCCCCCAGTTGCCTGAATTCTCACAGCTAGGAATAATGGAATAGGA 3473047 Query 148 CGTGCGGTTCTATTTTGTTGGTTT--CTAGGA--CCGCCGTAATGATTAATAGGGATAGT 203 | |||||||||||||||||||| || || ||| | |||||| | ||| | Sbjct 3473046 CCC-CGGTTCTATTTTGTTGGTTTTTCTCTGAACCCGGGGCCATGATTGAGAGGAACGAC 3472988 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| | ||| | | |||||||||||||||||| | ||||| ||| Sbjct 3472987 CGGGGGCATTCGTACTGTGCCGCTAGAGGTGAAATTCTTGGACTGGCGCAAGACGGGCTA 3472928 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||| |||| || ||||| |||||||||||||||| Sbjct 3472927 AAGCGTAAGCATTTGCCAAGAATGTTTTCATTAATCA 3472891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914928707264