Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-38 seq21 143 4e-32 seq7 86.0 1e-14 >seq1 Length=34528841 Score = 165 bits (182), Expect = 1e-38 Identities = 177/229 (77%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || || ||| ||||||||||||| |||||||||| | |||||||||||||||||||| Sbjct 33214387 ACACGCTGACTCGGTCAGTGTAGCGCTCGTGCGGCCCCGTACATCTAAGGGCATCACAGA 33214328 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||| || | || | | | ||| |||| || | |||| ||||||||| | Sbjct 33214327 CCTGTTATTGC-TCCATCTCGCGT-GACTG-AAGCTCCACTTGTCCATCTAAGAAGTGGG 33214271 Query 120 CCACCAACCATAGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 || | || | | | || || |||||| | | |||||||||||||||| Sbjct 33214270 CCGCGGGCCGCGGGGGTGGCCGCGCAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCG 33214211 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 ||||||| |||||||||| | |||||||||||||||||||||| ||||| Sbjct 33214210 GAATTAAACAGACAAATCGCGCCACCAACTAAGAACGGCCATGAACCAC 33214162 >seq21 Length=16446795 Score = 143 bits (158), Expect = 4e-32 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 3472523 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 3472582 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| | ||| ||||||||| || |||||| Sbjct 3472583 ACTAAGAACGGCCATGCACCACCACCCACGGGATCGAGAAAGAGCCCTCCGTCTGTC 3472639 Score = 77.0 bits (84), Expect = 5e-12 Identities = 63/78 (81%), Gaps = 9/78 (12%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG---------G 52 || || || ||| |||||||||||||||||||||||| | |||||||||| | Sbjct 3472312 ACACGCTGACTCAGTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGAACATCTAAG 3472371 Query 53 CATCACAGACCTGTTATT 70 |||||||||||||||||| Sbjct 3472372 CATCACAGACCTGTTATT 3472389 >seq7 Length=13814722 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/100 (76%), Gaps = 19/100 (19%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||||||| ||||||||||||||||||| | ||||||| Sbjct 1167118 GTCTTGTTCGTTTTCGGAATTAACCAGACAAACC-------------------GCCATGC 1167078 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 1167077 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 1167038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796571185683