Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5 325 7e-87 seq22 201 2e-49 seq2 178 2e-42 seq26223 120 5e-25 seq7 114 2e-23 seq13 98.7 2e-18 >seq5 Length=19279693 Score = 325 bits (360), Expect = 7e-87 Identities = 238/275 (87%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 3473 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 3414 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 3413 ACGACGGTCTAAACCCAGCTCACGTTGCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 3354 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3353 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 3294 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||| | || Sbjct 3293 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCGCCTGCT 3234 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 | ||| | | || | |||||||| ||||||| Sbjct 3233 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCAC 3199 Score = 208 bits (230), Expect = 1e-51 Identities = 196/244 (80%), Gaps = 13/244 (5%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||| | |||| | | || ||||||||||||||| ||||||||||||| Sbjct 1095013 TACTGAGCAGGATTGCTATTGCGACAACACATCATCAGTAGGGTAACACTAACCTGTCTC 1094954 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||| |||||||||| |||||||||||||| ||||||| | Sbjct 1094953 ACGACGGTCTAAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCAAACGCTTGGTG 1094894 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| || | || Sbjct 1094893 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCAC--TGATA 1094836 Query 180 TGAA----CG-CTTGGCTG---CCACAAGC--CAGTTATCCCTGTGGTAACTTTTCTGGC 229 ||| || | | | | | | |||| || |||||||||||||||||||||| | Sbjct 1094835 GGAAGAGCCGACATCGAAGGATCTAAAAGCCACATGTATCCCTGTGGTAACTTTTCTGAC 1094776 Query 230 ACCT 233 ||| Sbjct 1094775 GCCT 1094772 >seq22 Length=21910988 Score = 201 bits (222), Expect = 2e-49 Identities = 125/134 (93%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 7273128 TCATCAGTAGGGTAAAACTAAGCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 7273069 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| Sbjct 7273068 TTAGTGGGTGAACAATCCAAAGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 7273009 Query 151 CATCGAAGGATCAA 164 |||||||||||||| Sbjct 7273008 CATCGAAGGATCAA 7272995 >seq2 Length=20052193 Score = 178 bits (196), Expect = 2e-42 Identities = 115/126 (91%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||| Sbjct 12746622 AAACTAACCTGTCTCACGACGGTCTAAACCCTGCTCACGTTCCCTGTTAGTGGATGAACA 12746681 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| Sbjct 12746682 ATCCAACGCTTGGTGAATTCTGCTTCACAACGATAGGAAGAGCCGACATCGAAGGATCAA 12746741 Query 165 AAAGCA 170 |||||| Sbjct 12746742 AAAGCA 12746747 >seq26223 Length=220 Score = 120 bits (132), Expect = 5e-25 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGAT 267 |||||||||||||||||||| |||||||||| ||||||| ||| || ||||||||||||| Sbjct 220 TCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGAT 161 Query 268 AGGCCACACTTTCATGGTTTGTATTC 293 ||||||| |||||| |||| |||||| Sbjct 160 AGGCCACGCTTTCACGGTTCGTATTC 135 >seq7 Length=13814722 Score = 114 bits (126), Expect = 2e-23 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| Sbjct 1954217 GGTCTAAACCCAGCTCACGTTCCCTATTGGTCGGTGAACAATCCAACGCTTGGTCAATTC 1954276 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCG 155 |||||| |||||| |||||||||||||| Sbjct 1954277 TGCTTCACAGTGATAGAAAGAGCCGACATCG 1954307 Score = 105 bits (116), Expect = 1e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 |||| | |||||| ||||||| |||||||| |||||||||| ||||||||| |||||| Sbjct 1944600 AACTGAACTGTCTGATGACGGACTAAACCCCAATCACGTTCCCCATTAGTGGGCGAACAA 1944659 Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||||||| ||| |||||||| |||| || | |||||| || ||||| ||| Sbjct 1944660 TCCAACGCTCTGTGAACTCTGCTTCACAATGAGAGCAGGAGCCGTCACTGAAGGCTCA 1944717 >seq13 Length=21921923 Score = 98.7 bits (108), Expect = 2e-18 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| Sbjct 7285457 AAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCTTATTGGTGGGTGAAC 7285398 Query 104 AA 105 || Sbjct 7285397 AA 7285396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854146730208