Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1 132 9e-29 seq21 123 5e-26 >seq1 Length=34528841 Score = 132 bits (146), Expect = 9e-29 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| | Sbjct 33214317 GCAATAACAGGTCTGTGATGCCCTTAGATGTACGGGGCCGCACGAGCGCTACACTGACCG 33214376 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 || || || || | |||| |||| ||| |||||| | | | | | | ||||| Sbjct 33214377 AGTCAGCGTGTGTCTACCCTTCGCCGAGAGGCGCGGGTAACCCTCTGAGCCCCGCTCGTG 33214436 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||| | | ||| || | | | | |||||||||| || |||||||||| ||| Sbjct 33214437 ATGGGGCCCGGGGGTTGAAACTTTCCCCCGCCAACGAGGAAATCCAAGTAAGCGCGGGTC 33214496 Query 294 ATCAGCACGCGTTGATTACGT 314 | ||| |||||||| || || Sbjct 33214497 ACAAGCTCGCGTTGACTAAGT 33214517 >seq21 Length=16446795 Score = 123 bits (136), Expect = 5e-26 Identities = 162/223 (73%), Gaps = 11/223 (5%) Strand=Plus/Minus Query 116 AATAACAGGTCTGTGATGC---------CCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166 ||||||||||||||||||| |||||||||| | ||||||||||||||||||| Sbjct 3472389 AATAACAGGTCTGTGATGCTTAGATGTTCCTTAGATGTCCGGGGCCGCACGCGCGCTACA 3472330 Query 167 CTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 ||||| ||| || || || | |||| || | ||| || || | | | | | | Sbjct 3472329 CTGACTGAGTCAGCGTGTGTCTACCCTTTGCTGAGAGGCGCAGGAAACCC-GCTGAGCCC 3472271 Query 227 TG-TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || ||||| |||||| | | ||| || | | | | ||| ||||||| | |||||| Sbjct 3472270 TGCTCGTGATGGGGACCGGGGGTTGAAACTTTCCCCCGCCAATGAGGAATTCACAGTAAG 3472211 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||| ||| |||||||| || |||||||||||||||| Sbjct 3472210 CGCGGGTCACAAGCTCGCGTTGACTAAGTCCCTGCCCTTTGTA 3472168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946919221504