Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1978 621 1e-175 seq10 167 7e-39 seq21 145 2e-32 seq492 132 1e-28 seq5 120 9e-25 seq13 82.4 2e-13 seq2 82.4 2e-13 seq32 80.6 8e-13 seq16 78.8 3e-12 seq7 75.2 3e-11 seq4 75.2 3e-11 >seq1978 Length=919 Score = 621 bits (688), Expect = 1e-175 Identities = 451/513 (88%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 47 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 105 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 165 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 166 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 225 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 226 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 285 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 286 CTAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 343 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 344 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 403 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 404 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 462 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 463 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 522 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 523 TAATCTTTGAGACAAGCATATGACTACTGGCAG 555 >seq10 Length=21015401 Score = 167 bits (184), Expect = 7e-39 Identities = 141/173 (82%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | |||| ||| Sbjct 41931 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACGACC 41990 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | || || | |||||| |||||||||||||||||||||||||||||||| Sbjct 41991 TCCCTGAGTAGG-------TGATTTGCACGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 42043 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA 172 |||||||| | ||||| |||||||||||| | |||||| |||||| |||| || Sbjct 42044 TTCTCAGGGTTCCTCTGCGGAATCGAACCGTGATTCCCTGTTACCTGTTGTTA 42096 >seq21 Length=16446795 Score = 145 bits (160), Expect = 2e-32 Identities = 133/164 (81%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAA 401 |||||||||| ||||| ||||| || | |||||||| ||| ||| | ||||||| Sbjct 3476371 AGCATGTATTTGCTCTGGAATTGCCGCAGTTATCCAAGTAACGGAGGAGCGATCAAATGG 3476430 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || | |||||||||||||||||||||||||| | |||||| | | | |||| |||| Sbjct 3476431 ACCAGAACTGATTTAATGAGCCATTCGCAGTGTAACTGTACCGGCCGTGTGTACTAAGAC 3476490 Query 462 ATGCATGGC-TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 3476491 TTGCATGGCATTAATCTTTGAGACAAGCATATG-CTACTGGCAG 3476533 >seq492 Length=1681 Score = 132 bits (146), Expect = 1e-28 Identities = 110/133 (83%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 69 CGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGC 128 ||||| ||| | |||||| |||||||||||||||||||||| |||||| |||| |||||| Sbjct 63 CGGGAGTGGATGATTTGC-CGCCTGCTGCCTTCCTTGGATGAGGTAGCTGTTTATCAGGC 121 Query 129 TCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA 188 ||||||| ||||||| |||||| ||||| |||||| || | |||||||||||| | Sbjct 122 TCCCTCTGCGGAATCCAACCCTGATTCCTCGTTACTTGTGGTCACCATGGTAGGCACAGA 181 Query 189 TCCTACCATCGAA 201 |||||||||| Sbjct 182 AAGTACCATCGAA 194 >seq5 Length=19279693 Score = 120 bits (132), Expect = 9e-25 Identities = 156/214 (73%), Gaps = 19/214 (9%) Strand=Plus/Minus Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTT-TTAGCATGTAT 351 || |||||| ||| |||||| ||| | | || | ||| | | || || |||||||| Sbjct 5014 GTGGGTTTTGGGTCTGATAAATGCACGCGTCCCCGGGGGTCAGCGCTTGTTGGCATGTAT 4955 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-CTATCAAATAAACGATAACT 410 ||||||||||||| |||| |||||||| ||| | | | | | |||| ||| |||||| Sbjct 4954 TAGCTCTAGAATTGCCACAGTTATCCAAGTAATGTTGGAGCGACCAAAGGAACCATAACT 4895 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 |||||||||||||||||||||| | |||| | | || | ||||||||| ||||| Sbjct 4894 GATTTAATGAGCCATTCGCAGTGTAACTGAACTGGCTGTATGTACTTAGACTTGCAT--- 4838 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||||| Sbjct 4837 -----------GACAAGCATATG-CTACTGGCAG 4816 >seq13 Length=21921923 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 21028676 TACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 21028726 Score = 77.0 bits (84), Expect = 1e-11 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 17564174 TACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATACG-CTACTGGCAG 17564124 >seq2 Length=20052193 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 10458621 TACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 10458671 >seq32 Length=360877 Score = 80.6 bits (88), Expect = 8e-13 Identities = 49/51 (96%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 70750 ACTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 70701 >seq16 Length=18785820 Score = 78.8 bits (86), Expect = 3e-12 Identities = 48/50 (96%), Gaps = 1/50 (2%) Strand=Plus/Minus Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 10424628 CTTAGACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 10424580 Score = 77.0 bits (84), Expect = 1e-11 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| | ||||||||||||||||||||||||||||||| |||||||||| Sbjct 8230902 TACTTAGCCTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 8230852 >seq7 Length=13814722 Score = 75.2 bits (82), Expect = 3e-11 Identities = 49/53 (92%), Gaps = 1/53 (2%) Strand=Plus/Minus Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || |||||||| |||| |||||||||||||||||||||||||| ||||||||| Sbjct 9615010 TAAACTTAGACTTGCAGGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCA 9614959 >seq4 Length=20010643 Score = 75.2 bits (82), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| || |||||||||||||||||||||||||||| |||||||||| Sbjct 20001771 ACTTAGACGTGTATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 20001722 Score = 75.2 bits (82), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 1/51 (2%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| || |||||||||||||||||||||||||||| |||||||||| Sbjct 20006486 ACTTAGACGTGTATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 20006437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509952272128