Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cynoglossus_20semilaevis_20[refseq_20GCF_5F000523025.1_202014-01-28] 29,643 sequences; 470,199,494 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 226 2e-54 seq7 123 2e-23 >seq4 Length=20010643 Score = 226 bits (250), Expect = 2e-54 Identities = 744/1149 (65%), Gaps = 33/1149 (3%) Strand=Plus/Plus Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 |||||||| || ||||| || | ||| ||||||||| ||| ||| || | ||| Sbjct 16959891 TGGAACTCTCCAGACAGAACTCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGAC 16959950 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 || ||||||| || || ||||| || || || || |||||||| || | || || | Sbjct 16959951 TCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATGGGGGCCATCAGCAGACTG 16960010 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTA 65611 || | | ||| | | || || | || | |||||| ||||| ||| | Sbjct 16960011 TTCCTGACTCCATGTTTGGAGATCTTCTCCTTCAGCAGGGCCCAGTCCCACA--GGTCTG 16960068 Query 65612 TCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG 65671 | | || | || | ||||| || | || ||| | || | ||| | || || || Sbjct 16960069 TGGGCGTCTTCTCC----CACATGTCGTACTGAAGGATGCCCTTGCTGACTGGAGACCCT 16960124 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCA 65731 | | | || || ||| ||| || || | ||||||| ||| || ||||| Sbjct 16960125 TCGTACGTCTCATAGGGGCCCAACTCTGCAGCCAGCTCGCAGCTGGCCTCTAGGGCGGCG 16960184 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGC 65791 | || ||||||||||| || | || || | || ||| ||| || | || Sbjct 16960185 TAGTAGATGGTCTCGAAGATTTGGATGTTGAGCAGCTGAGCTTCAGGGCTTTCAAAAGGG 16960244 Query 65792 ATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGA 65851 | || |||||||| || | ||| |||||||| || || ||||| || || || | || Sbjct 16960245 AAACGCATCAGGATGAAGGCGTCTGCCAGACCCTGGACACCAATTCCTATTGGCCTGTGG 16960304 Query 65852 CGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTC 65911 ||| ||||| | ||||| || ||||| ||||| ||||| || || || ||| Sbjct 16960305 CGCTTGTTGGAGTTTTCAGCCTCGGGCACAGGATAGTAGTTGATGTCTATGATCTTGTTC 16960364 Query 65912 AAATTGCGTGTC-ACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970 | ||| | || | | ||| | | || || || | ||| ||| || | Sbjct 16960365 AGATTTC-TGACGATCACCTTGGTCACCTGTGTCAGTTTGTTGAAGTCATAA------GT 16960417 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 || || || ||| || ||| ||| || || | || || || || || || Sbjct 16960418 CCGCTCTGGGGTGACGTACATG------TTGAGA---GCGATGGACGCCAGATTACAAAC 16960468 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 || | |||||| | ||| ||||| || ||||| |||||||| || ||||| || Sbjct 16960469 GGCCACCTCGTCTGTGCTGGTGTACTCCACGATTTCTGTGCACAGGTTGCTGCACTTGAT 16960528 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 |||||||| ||||| || || ||||| | ||||| || || ||||| | |||||| || Sbjct 16960529 GGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTAGGG 16960588 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 || ||||| || || |||||||| ||||||||||| || | ||||||||| Sbjct 16960589 CGTACCGGTTTCTGTCTGCGACTCAATTATGGCGTGCCACAGCTGTTGAGCCTTCACCAC 16960648 Query 66211 ACG----TACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCAC 66266 || || |||| |||| | | | || | |||||| | ||||| || | Sbjct 16960649 GCGCTTCACCCTCCCTTCCTTCTCATACCTAGT----GTAGAGCTCCTCGAACTTCTCCC 16960704 Query 66267 CCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCT 66326 |||| ||| ||||| ||||||| |||||||| || ||||| || | Sbjct 16960705 CCCAGCACTCGTCCAGACCGGGACACTCACTGGGACACATGAGTGACCAGTCCTGGTTGC 16960764 Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 ||| || | ||| || || ||||| ||||| | ||||||||||||||| || |||| Sbjct 16960765 TTTCCACCCTCTTCATGAACAGGTCAGGGATCCACATGGCGTAGAAGAGATCTCGCGCTC 16960824 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGCATGC 66445 |||||||| | || || || | | ||| || ||||| ||||||| ||| |||| Sbjct 16960825 TCTGCTCCTC-CTTCCCTGTGTTCTTCTTAAGATCCAGGAAGTCAAAGACGTCATAATGC 16960883 Query 66446 CATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAG 66505 || || |||| ||| ||||| || | || ||| ||| |||||| || || |||||| Sbjct 16960884 CAGGGCTCCAAGTAAATGGCAAAGGCTCCAGGACGCTTGTTGCCACCCTGATCCACGTAG 16960943 Query 66506 CGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTG 66565 || || ||||| | || | || ||| || || || ||||| || || || ||||| Sbjct 16960944 CGCGCTGTGTTGTTATACACTCTCAGCATGGGCACCAGGCCGTTTGAGTTTCCGTTGGTC 16961003 Query 66566 CCGTCGATG 66574 || ||||| Sbjct 16961004 CCAGCGATG 16961012 >seq7 Length=13814722 Score = 123 bits (136), Expect = 2e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| ||| ||||||| ||||| |||||||| || |||| Sbjct 13788152 TGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAGGCACGTTGCTTCTACGGTTTTCAGA 13788211 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||| | || |||||||||| Sbjct 13788212 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTCCTGATCAACACCTACATCAGGG 13788271 Query 61376 AGC 61378 ||| Sbjct 13788272 AGC 13788274 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| ||||| | || ||||| | || ||| ||| || || || || ||||| | Sbjct 13788552 TGGTGGCCTTTGCTGCAGTGGAGGGAATTTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 13788611 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT 61604 |||||||||| ||||| || |||||||| |||||||| ||||||| |||| Sbjct 13788612 GGTTGAAGAAGCGTGGCCTGATGCCCGGCTTGACCTTCTCCAATGAGCTGAT 13788663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397424368993520