Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq88411 167 4e-39 seq10895 95.1 2e-17 seq8765 75.2 2e-11 >seq88411 Length=793 Score = 167 bits (184), Expect = 4e-39 Identities = 209/278 (75%), Gaps = 8/278 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96 |||| ||| ||| |||| ||| || | | | | | ||||||||||||||||||||||| Sbjct 275 ATGCTCTTAGCTGAGTGTCCCGCTGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTG 216 Query 97 TTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||||| | || |||||| ||| |||||||| ||||||||| | ||| Sbjct 215 TTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGG 157 Query 155 TTCTATTTTGTTGGTT-TCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||| |||| ||| | || | | |||||||| ||||| | |||||| | Sbjct 156 TTCTATTTTGTGGGTTCTCT-GAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATT 98 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 97 CGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAAGC 38 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 || ||||| |||||||||||||||| ||||||||| Sbjct 37 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAG 1 >seq10895 Length=7650 Score = 95.1 bits (104), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCG-GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| | | |||| ||| |||| ||| | |||||||||||||||||||||||| Sbjct 4453 ATGCTCTTAGCCGAGTGTCCCGTGGGATCCAAAGCATTTACTTTGAAAAAATTAGAGTGT 4394 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| | || |||||| ||| ||| |||| ||| ||||| | ||| Sbjct 4393 TCAAAGCAGGCCCAGTCAACT-GAATACCGCAGCTAGGAGTAATGGAACAGGAC-TCCGG 4336 Query 155 TTCTATTTTGTTGGTTT 171 || ||| |||||||||| Sbjct 4335 TTTTATGTTGTTGGTTT 4319 >seq8765 Length=104575 Score = 75.2 bits (82), Expect = 2e-11 Identities = 93/126 (74%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| || ||||| | ||||| | | |||||||||||||||||| Sbjct 78315 ATGATTAAGAGGGACGGTGGGGGGCATTCGTATTGTGTCGCTAGAGGTGAAATTCTTGGA 78374 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||| | | |||||||| || ||||| |||||||||||||||| ||| Sbjct 78375 CCGGCGCAAGACGGATGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 78433 Query 306 CGAAAG 311 |||||| Sbjct 78434 CGAAAG 78439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914316685568