Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq88411 167 4e-39
seq10895 95.1 2e-17
seq8765 75.2 2e-11
>seq88411
Length=793
Score = 167 bits (184), Expect = 4e-39
Identities = 209/278 (75%), Gaps = 8/278 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGG-GGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTG 96
|||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||
Sbjct 275 ATGCTCTTAGCTGAGTGTCCCGCTGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTG 216
Query 97 TTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||||||||||| | || |||||| ||| |||||||| ||||||||| | |||
Sbjct 215 TTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGG 157
Query 155 TTCTATTTTGTTGGTT-TCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213
||||||||||| |||| ||| | || | | |||||||| ||||| | |||||| |
Sbjct 156 TTCTATTTTGTGGGTTCTCT-GAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATT 98
Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 97 CGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAAGC 38
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311
|| ||||| |||||||||||||||| |||||||||
Sbjct 37 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAG 1
>seq10895
Length=7650
Score = 95.1 bits (104), Expect = 2e-17
Identities = 106/137 (77%), Gaps = 6/137 (4%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCG-GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| | | |||| ||| |||| ||| | ||||||||||||||||||||||||
Sbjct 4453 ATGCTCTTAGCCGAGTGTCCCGTGGGATCCAAAGCATTTACTTTGAAAAAATTAGAGTGT 4394
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| | || |||||| ||| ||| |||| ||| ||||| | |||
Sbjct 4393 TCAAAGCAGGCCCAGTCAACT-GAATACCGCAGCTAGGAGTAATGGAACAGGAC-TCCGG 4336
Query 155 TTCTATTTTGTTGGTTT 171
|| ||| ||||||||||
Sbjct 4335 TTTTATGTTGTTGGTTT 4319
>seq8765
Length=104575
Score = 75.2 bits (82), Expect = 2e-11
Identities = 93/126 (74%), Gaps = 1/126 (1%)
Strand=Plus/Plus
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||| ||||| || ||||| | ||||| | | ||||||||||||||||||
Sbjct 78315 ATGATTAAGAGGGACGGTGGGGGGCATTCGTATTGTGTCGCTAGAGGTGAAATTCTTGGA 78374
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
||||| | | |||||||| || ||||| |||||||||||||||| |||
Sbjct 78375 CCGGCGCAAGACGGATGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 78433
Query 306 CGAAAG 311
||||||
Sbjct 78434 CGAAAG 78439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914316685568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |