Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq92523 127 9e-27 seq8424 116 2e-23 seq12483 93.3 2e-16 seq3798 84.2 9e-14 seq50 78.8 4e-12 >seq92523 Length=1103 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 528 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 587 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 588 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 647 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 648 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 687 >seq8424 Length=17410 Score = 116 bits (128), Expect = 2e-23 Identities = 96/116 (83%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA-CTCTGGTGG 627 |||||||||||||||| ||||||| ||| | |||| |||||||| | ||| ||||||| | Sbjct 13167 GGACCCGAAAGATGGTTAACTATGTCTGGACAGGGCGAAGCCAGGGTAAAACTCTGGTTG 13226 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || |||||| ||| |||||||| || || || | ||||||||||||||| Sbjct 13227 AGGCCCGTAGCGGTCCTGACGTGCAAAACGGTCATCCGACCTGGGTATAGGGGCGA 13282 >seq12483 Length=235728 Score = 93.3 bits (102), Expect = 2e-16 Identities = 77/93 (83%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG-CTCGCAGCGGTTC 643 |||||||||||| |||| |||||||| ||||||||||||||||| | || || ||| | Sbjct 161822 GAACTATGCCTGGGCAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCCCCGTAGAGGTCC 161763 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 || ||||||||||| ||||| | |||||||| Sbjct 161762 TGACGTGCAAATCGGTCGTCCGACCTGGGTATA 161730 >seq3798 Length=10926 Score = 84.2 bits (92), Expect = 9e-14 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 || || |||| |||||||| ||||| || |||| |||||| |||||||||||||||| Sbjct 10668 GGTCCTGAAACATGGTGAATTATGCATGGGGAGGGCAAAGCCAAAGGAAACTCTGGTGGA 10609 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || | |||||| || |||| ||||| || ||| || |||| ||||| Sbjct 10608 TGCCTGTAGCGGTCCTTACGTGAAAATCAATTGTCCAACCCGGGTGTAGGG 10558 >seq50 Length=397128 Score = 78.8 bits (86), Expect = 4e-12 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 10530 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 10471 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 | ||| |||||| |||| ||||||| | | ||||| ||||| Sbjct 10470 ACCGGCACGAGACCAATAGTCGACAAGTACCATAAGGGAAAGTTGAAA 10423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077929731800