Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq92523 127 9e-27
seq8424 116 2e-23
seq12483 93.3 2e-16
seq3798 84.2 9e-14
seq50 78.8 4e-12
>seq92523
Length=1103
Score = 127 bits (140), Expect = 9e-27
Identities = 124/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 528 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 587
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 588 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 647
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 648 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 687
>seq8424
Length=17410
Score = 116 bits (128), Expect = 2e-23
Identities = 96/116 (83%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA-CTCTGGTGG 627
|||||||||||||||| ||||||| ||| | |||| |||||||| | ||| ||||||| |
Sbjct 13167 GGACCCGAAAGATGGTTAACTATGTCTGGACAGGGCGAAGCCAGGGTAAAACTCTGGTTG 13226
Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|||| || |||||| ||| |||||||| || || || | |||||||||||||||
Sbjct 13227 AGGCCCGTAGCGGTCCTGACGTGCAAAACGGTCATCCGACCTGGGTATAGGGGCGA 13282
>seq12483
Length=235728
Score = 93.3 bits (102), Expect = 2e-16
Identities = 77/93 (83%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG-CTCGCAGCGGTTC 643
|||||||||||| |||| |||||||| ||||||||||||||||| | || || ||| |
Sbjct 161822 GAACTATGCCTGGGCAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCCCCGTAGAGGTCC 161763
Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676
|| ||||||||||| ||||| | ||||||||
Sbjct 161762 TGACGTGCAAATCGGTCGTCCGACCTGGGTATA 161730
>seq3798
Length=10926
Score = 84.2 bits (92), Expect = 9e-14
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|| || |||| |||||||| ||||| || |||| |||||| ||||||||||||||||
Sbjct 10668 GGTCCTGAAACATGGTGAATTATGCATGGGGAGGGCAAAGCCAAAGGAAACTCTGGTGGA 10609
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|| | |||||| || |||| ||||| || ||| || |||| |||||
Sbjct 10608 TGCCTGTAGCGGTCCTTACGTGAAAATCAATTGTCCAACCCGGGTGTAGGG 10558
>seq50
Length=397128
Score = 78.8 bits (86), Expect = 4e-12
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||||||||||||| | || || |||||| | | ||||| |||||||
Sbjct 10530 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAAT 10471
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147
| ||| |||||| |||| ||||||| | | ||||| |||||
Sbjct 10470 ACCGGCACGAGACCAATAGTCGACAAGTACCATAAGGGAAAGTTGAAA 10423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2077929731800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |