Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10895 114 2e-23 seq15764 98.7 2e-18 seq81258 87.8 3e-15 seq6322 80.6 4e-13 >seq10895 Length=7650 Score = 114 bits (126), Expect = 2e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || || ||||||| |||||||| |||| || ||||| Sbjct 3924 CTACTTAGCATGCAGATGTCTCATTGGTAATCGGAAATAACCAGATTAATCCCTTCACCA 3983 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||| || ||||||||||||||| |||||| |||||||| | | ||||||| Sbjct 3984 ACTAAGAACAGCTATGCACCACCACCCACAGAATCCAGAAAGAGATTTTAATCTGT 4039 >seq15764 Length=49958 Score = 98.7 bits (108), Expect = 2e-18 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| ||||||||||||| || | ||||||||||||||||| ||||| ||||||||||||| Sbjct 39092 ATCGCTCCACCAACTAAAAATGACCATGCACCACCACCCACAGAATTAAGAAAGAGCTAT 39151 Query 250 CAATCTGTC 258 ||||||||| Sbjct 39152 CAATCTGTC 39160 >seq81258 Length=542 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/65 (91%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 79 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 21 Query 76 AAACT 80 || || Sbjct 20 AATCT 16 >seq6322 Length=148042 Score = 80.6 bits (88), Expect = 4e-13 Identities = 148/215 (69%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||| | | || ||||| |||| ||||||||||| | || |||||||||||||| ||| Sbjct 131259 CAGTTTTGTGCCCGTGCAGCCCCAGACATCTAAGGGTAGCAAAGACCTGTTATTGC-TCA 131317 Query 77 AACTTC----CATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA- 131 || || | |||| | || | ||| |||||| ||| | | || ||| Sbjct 131318 GTGTTGTGTACAGTAGCTGAACAGCACTTGTCACTCTAAAAAGTTGGACGCCGTTCATGT 131377 Query 132 --GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | || | | || ||| | | |||| || ||||| ||||||||| |||||| Sbjct 131378 AGGGCCGTGTAACCAGTTGGCATGCCAGATTCTCATTTGTTATTGGAATTAACTAGACAA 131437 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 | ||||||||| ||| ||| ||||||||||||| Sbjct 131438 TTTGCTCCACCAATTAAAAACAGCCATGCACCACC 131472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796054992996