Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq8424 210 4e-52
seq9525 183 5e-44
seq20817 154 3e-35
seq6538 127 3e-27
seq3373 125 1e-26
seq2855 125 1e-26
seq17313 102 1e-19
seq778 95.1 2e-17
seq17581 93.3 7e-17
seq19808 82.4 1e-13
>seq8424
Length=17410
Score = 210 bits (232), Expect = 4e-52
Identities = 232/313 (74%), Gaps = 20/313 (6%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || | ||||||||||||||| |||||||||||
Sbjct 14040 TACTGAGCAGGATTACTATTGCAACAACACATTATCAGTAGGGTAAAAGTAACCTGTCTC 13981
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 13980 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGAAGAACAATCCAACACTTGGTG 13921
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||| ||||||||||||||||||||||||||| | | |||| || |
Sbjct 13920 AATTCTGCTTCACAATGACAGGAAGAGCCGACATCGAAGGATCAAATA-CGACGTTGCAA 13862
Query 180 TGAACGCTTGGCT-----------------GCCACAAGCCAGTTATCCCTGTGGTAACTT 222
||||| ||||||| |||||||||||||||||||
Sbjct 13861 TGAACACTTGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATCCCTGTGGTAACTT 13802
Query 223 TTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281
||||| |||||| || | ||| | | | |||||| | ||||| | ||||||
Sbjct 13801 TTCTGACACCTCCTGCTTAAAACCCAAAAAAGTCAGAAGGATTGTGAGGCCCCGCTTTCA 13742
Query 282 TGGTTTGTATTCA 294
||| ||||||||
Sbjct 13741 CGGTCTGTATTCA 13729
>seq9525
Length=14788
Score = 183 bits (202), Expect = 5e-44
Identities = 118/129 (91%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 12118 CAGCTCACGTTCCCTATTAATGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAA 12177
Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 12178 TGGTAGGAAGAGCCGACATCGAAGGATCAAAAGGCGACGTCGCTATGAACGCTTGGCCGC 12237
Query 195 CACAAGCCA 203
|||||||||
Sbjct 12238 CACAAGCCA 12246
>seq20817
Length=2508
Score = 154 bits (170), Expect = 3e-35
Identities = 99/108 (92%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165
|||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 616 TCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAA 557
Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213
|||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 556 AAGCGACGTCGCTATGAACGCTTGGCTGACACAAGCCAGTTATCCCTG 509
>seq6538
Length=43639
Score = 127 bits (140), Expect = 3e-27
Identities = 85/95 (89%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125
|||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||
Sbjct 26742 GTCTAATGCCAGCTCCCGTTCCCTATTAGTGGGTGAACAATCCAATGCTTGGTGAATTCT 26801
Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160
||||| |||||||||||||||||||||||||||
Sbjct 26802 GCTTCACAATGATAGGAAGAGCCGACATCGAAGGA 26836
>seq3373
Length=3264
Score = 125 bits (138), Expect = 1e-26
Identities = 97/114 (85%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || | ||||||| |||||||| ||||||||||
Sbjct 1287 TACTGAGCAGGATTACTATTGAAACAACACATTATCAGTACGGTAAAACGAACCTGTCTC 1228
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113
| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1227 ACGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAGCGC 1174
>seq2855
Length=16863
Score = 125 bits (138), Expect = 1e-26
Identities = 95/112 (85%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 77 GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATG 136
||||| ||||| |||||||| |||||| ||| |||| || |||||||||||| |||
Sbjct 6444 GCTCAGGTTCCTTATTAGTGAGTGAACCATCTAACGTTTGGTGAATTCTGCTTCACAATG 6385
Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188
| |||||||||||||||||||||||| |||||| || ||||||||||| |||
Sbjct 6384 ACAGGAAGAGCCGACATCGAAGGATCGAAAAGCGACATCGCTATGAACACTT 6333
>seq17313
Length=37005
Score = 102 bits (112), Expect = 1e-19
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 28938 AGGGTAAAACTAACCTGTCTCACGACGGTCTTCTCCCAGCTCACGTTCCCTATTAGTGGG 28997
Query 99 TGAACA 104
||||||
Sbjct 28998 TGAACA 29003
>seq778
Length=57089
Score = 95.1 bits (104), Expect = 2e-17
Identities = 86/107 (80%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95
|||| ||| ||||||| |||| ||| | | | ||||| |||||||||||||||||||||
Sbjct 2764 AGTATGGTTAAACTAATCTGTGTCACTATGTTTTAAACTCAGCTCACGTTCCCTATTAGT 2823
Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142
|| ||| |||||||| ||| ||| ||||||||| | | |||| ||
Sbjct 2824 -GGAGAATAATCCAACACTTGGCGAGTTCTGCTTCAGAAGGATAAGA 2869
>seq17581
Length=6106
Score = 93.3 bits (102), Expect = 7e-17
Identities = 72/86 (84%), Gaps = 5/86 (6%)
Strand=Plus/Plus
Query 116 ACCGAATTCTGCTTCGGTATGATA-----GGAAGAGCCGACATCGAAGGATCAAAAAGCA 170
|| |||||||||||| |||||| ||| ||||| ||||| ||||||||||||||
Sbjct 1878 ACAGAATTCTGCTTCACAATGATACAGTAGGAGGAGCCAACATCAAAGGATCAAAAAGCG 1937
Query 171 ACGTCGCTATGAACGCTTGGCTGCCA 196
||||||||||||||| ||||||||||
Sbjct 1938 ACGTCGCTATGAACGGTTGGCTGCCA 1963
>seq19808
Length=19686
Score = 82.4 bits (90), Expect = 1e-13
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113
||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 8790 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAATGC 8837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 853575367296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |