Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8424 210 4e-52 seq9525 183 5e-44 seq20817 154 3e-35 seq6538 127 3e-27 seq3373 125 1e-26 seq2855 125 1e-26 seq17313 102 1e-19 seq778 95.1 2e-17 seq17581 93.3 7e-17 seq19808 82.4 1e-13 >seq8424 Length=17410 Score = 210 bits (232), Expect = 4e-52 Identities = 232/313 (74%), Gaps = 20/313 (6%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || | ||||||||||||||| ||||||||||| Sbjct 14040 TACTGAGCAGGATTACTATTGCAACAACACATTATCAGTAGGGTAAAAGTAACCTGTCTC 13981 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 13980 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGAAGAACAATCCAACACTTGGTG 13921 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||| ||||||||||||||||||||||||||| | | |||| || | Sbjct 13920 AATTCTGCTTCACAATGACAGGAAGAGCCGACATCGAAGGATCAAATA-CGACGTTGCAA 13862 Query 180 TGAACGCTTGGCT-----------------GCCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||||| ||||||| ||||||||||||||||||| Sbjct 13861 TGAACACTTGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATCCCTGTGGTAACTT 13802 Query 223 TTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 ||||| |||||| || | ||| | | | |||||| | ||||| | |||||| Sbjct 13801 TTCTGACACCTCCTGCTTAAAACCCAAAAAAGTCAGAAGGATTGTGAGGCCCCGCTTTCA 13742 Query 282 TGGTTTGTATTCA 294 ||| |||||||| Sbjct 13741 CGGTCTGTATTCA 13729 >seq9525 Length=14788 Score = 183 bits (202), Expect = 5e-44 Identities = 118/129 (91%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 12118 CAGCTCACGTTCCCTATTAATGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAA 12177 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGC 194 || ||||||||||||||||||||||||||||| || ||||||||||||||||||||| || Sbjct 12178 TGGTAGGAAGAGCCGACATCGAAGGATCAAAAGGCGACGTCGCTATGAACGCTTGGCCGC 12237 Query 195 CACAAGCCA 203 ||||||||| Sbjct 12238 CACAAGCCA 12246 >seq20817 Length=2508 Score = 154 bits (170), Expect = 3e-35 Identities = 99/108 (92%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 106 TCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA 165 |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 616 TCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGGATCAAA 557 Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 556 AAGCGACGTCGCTATGAACGCTTGGCTGACACAAGCCAGTTATCCCTG 509 >seq6538 Length=43639 Score = 127 bits (140), Expect = 3e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||| Sbjct 26742 GTCTAATGCCAGCTCCCGTTCCCTATTAGTGGGTGAACAATCCAATGCTTGGTGAATTCT 26801 Query 126 GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 ||||| ||||||||||||||||||||||||||| Sbjct 26802 GCTTCACAATGATAGGAAGAGCCGACATCGAAGGA 26836 >seq3373 Length=3264 Score = 125 bits (138), Expect = 1e-26 Identities = 97/114 (85%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || | ||||||| |||||||| |||||||||| Sbjct 1287 TACTGAGCAGGATTACTATTGAAACAACACATTATCAGTACGGTAAAACGAACCTGTCTC 1228 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113 | ||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1227 ACGACGGTCTAAACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAGCGC 1174 >seq2855 Length=16863 Score = 125 bits (138), Expect = 1e-26 Identities = 95/112 (85%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 77 GCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATG 136 ||||| ||||| |||||||| |||||| ||| |||| || |||||||||||| ||| Sbjct 6444 GCTCAGGTTCCTTATTAGTGAGTGAACCATCTAACGTTTGGTGAATTCTGCTTCACAATG 6385 Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 | |||||||||||||||||||||||| |||||| || ||||||||||| ||| Sbjct 6384 ACAGGAAGAGCCGACATCGAAGGATCGAAAAGCGACATCGCTATGAACACTT 6333 >seq17313 Length=37005 Score = 102 bits (112), Expect = 1e-19 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 28938 AGGGTAAAACTAACCTGTCTCACGACGGTCTTCTCCCAGCTCACGTTCCCTATTAGTGGG 28997 Query 99 TGAACA 104 |||||| Sbjct 28998 TGAACA 29003 >seq778 Length=57089 Score = 95.1 bits (104), Expect = 2e-17 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 |||| ||| ||||||| |||| ||| | | | ||||| ||||||||||||||||||||| Sbjct 2764 AGTATGGTTAAACTAATCTGTGTCACTATGTTTTAAACTCAGCTCACGTTCCCTATTAGT 2823 Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142 || ||| |||||||| ||| ||| ||||||||| | | |||| || Sbjct 2824 -GGAGAATAATCCAACACTTGGCGAGTTCTGCTTCAGAAGGATAAGA 2869 >seq17581 Length=6106 Score = 93.3 bits (102), Expect = 7e-17 Identities = 72/86 (84%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 116 ACCGAATTCTGCTTCGGTATGATA-----GGAAGAGCCGACATCGAAGGATCAAAAAGCA 170 || |||||||||||| |||||| ||| ||||| ||||| |||||||||||||| Sbjct 1878 ACAGAATTCTGCTTCACAATGATACAGTAGGAGGAGCCAACATCAAAGGATCAAAAAGCG 1937 Query 171 ACGTCGCTATGAACGCTTGGCTGCCA 196 ||||||||||||||| |||||||||| Sbjct 1938 ACGTCGCTATGAACGGTTGGCTGCCA 1963 >seq19808 Length=19686 Score = 82.4 bits (90), Expect = 1e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGC 113 ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 8790 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAATGC 8837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853575367296