Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq88411 104 2e-20 seq10895 75.2 1e-11 >seq88411 Length=793 Score = 104 bits (114), Expect = 2e-20 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 238 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 179 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| || |||| || | | ||||| Sbjct 178 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGT-GGGTTCTCTGAACTGGGGCCATGAT 121 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 120 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 66 >seq10895 Length=7650 Score = 75.2 bits (82), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 ||||||||||||||||||||| |||||||||||||| | || |||||| | | Sbjct 4417 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAGTCAACT-GAATACCGCAGCTA 4359 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||| |||| ||| ||||| | ||||| ||| |||| ||||| Sbjct 4358 GGAGTAATGGAACAGGAC-TCCGGTTTTATGTTGTTGGTTT 4319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511521280640