Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq17581 161 3e-37 seq34969 136 1e-29 seq64267 131 5e-28 seq4909 122 3e-25 seq4980 107 6e-21 seq7855 93.3 1e-16 seq8753 89.7 2e-15 seq20817 87.8 6e-15 seq3449 84.2 7e-14 seq22664 80.6 9e-13 seq2753 80.6 9e-13 seq8169 78.8 3e-12 seq1754 75.2 4e-11 >seq17581 Length=6106 Score = 161 bits (178), Expect = 3e-37 Identities = 139/172 (81%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 || |||||||||||||| ||| || || | | ||||| ||||| ||||| || |||| Sbjct 2116 TTCTTCTACACCTCTCATGTCTCTTTACGGTGCCAGACTAAAGTCA-GCTCACCAAGGTC 2174 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | | Sbjct 2175 CTCTTTCCCCGCTGATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATGGGGG 2234 Query 364 ATAGGGACAGTGGGAATCTCG----TTAATCCATTCATGCGCGTCACTAATT 411 |||||||||||||||| || |||||||||||| | ||||||||| Sbjct 2235 TTAGGGACAGTGGGAATNNNNNNNATTCATCCATTCATGCACATCACTAATT 2286 Score = 113 bits (124), Expect = 1e-22 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||| ||||||||| ||||||| |||||||| || |||| Sbjct 3292 CCTTAAGAGAGTCATAGTTACTCCTGCCGTTTACTCGCGCTTCATTGAATTTATTAACTT 3351 Query 493 TGACATTCAGAGCACTGGGCAG 514 ||||||| ||||||||||| || Sbjct 3352 TGACATTTAGAGCACTGGGTAG 3373 >seq34969 Length=851 Score = 136 bits (150), Expect = 1e-29 Identities = 83/88 (94%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| Sbjct 77 ATAGTTACTCCCGCCGTTTACCCGCACTTCATTGAATTTCCTCACTTTGACATTCAGAGC 136 Query 506 ACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||| ||||||||| Sbjct 137 ACTGGGCAGAAATCACATCGCGTCAACA 164 >seq64267 Length=301 Score = 131 bits (144), Expect = 5e-28 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||| ||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||| Sbjct 150 AGTGATAGTTACTACCGCCGTTTATCCGTGCTTCCTTGAATTTCTTCACTTTGACATTCA 209 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||| ||||||||||||| ||||||||| Sbjct 210 GAGCACTGCGCAGAAATCACATCGCGTCAACA 241 >seq4909 Length=26950 Score = 122 bits (134), Expect = 3e-25 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||| ||||||||||||||||||| ||| ||| | | | ||||||| ||| |||||| Sbjct 729 CTCCAACTTATTCTACACCTCTCAGGTCTCTTCCCTGTGCCAGACTAGAATCATGCTCAA 670 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 |||||||| |||||||||||||||| ||||||| ||||| ||||||| || Sbjct 669 CAGGGTCTCCTTTCCCCGCTGATTCTGCCAAGCTCGTTCTCTTGGCTATG 620 >seq4980 Length=3816 Score = 107 bits (118), Expect = 6e-21 Identities = 62/64 (97%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 370 ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGG 429 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 2330 ACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACAAGGCATTTGG 2271 Query 430 CTAC 433 |||| Sbjct 2270 CTAC 2267 >seq7855 Length=172721 Score = 93.3 bits (102), Expect = 1e-16 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25 TTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGC 84 ||||||| |||| |||| | ||||||||||||||||||| |||| | || ||| |||| Sbjct 138935 TTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTTTGATAGGTGTACCGC 138876 Query 85 CCCAGCCAAACTCCCCACCTGACAATGTC 113 || || ||||||||||||||| || |||| Sbjct 138875 CCGAGTCAAACTCCCCACCTGCCACTGTC 138847 >seq8753 Length=3291 Score = 89.7 bits (98), Expect = 2e-15 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 || |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2914 ATTGTTACTACCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAG 2972 >seq20817 Length=2508 Score = 87.8 bits (96), Expect = 6e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 ||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 224 GTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTATGTTCAGGGAG 165 Query 444 TCA 446 || Sbjct 164 GCA 162 >seq3449 Length=201195 Score = 84.2 bits (92), Expect = 7e-14 Identities = 48/49 (98%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 152476 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 152428 >seq22664 Length=1614 Score = 80.6 bits (88), Expect = 9e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1566 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAA 1614 >seq2753 Length=17149 Score = 80.6 bits (88), Expect = 9e-13 Identities = 70/85 (82%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTA 246 ||||| ||||||||||| | |||||||||||| || || |||| | |||||||||| Sbjct 14855 TAAGTGAAAAAACGATACGAGTAGTGGTATTTAACCAACGGCCGAGGC--CTCCCACTTA 14912 Query 247 TTCTACACCTCTCAAGTCATTTCAC 271 |||||||||||||| ||| ||||| Sbjct 14913 TTCTACACCTCTCATGTCTCTTCAC 14937 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 318 ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGG 377 |||| |||||||| ||||||||||||||||||||||| || | | ||||||||||||| Sbjct 15004 ATTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGACTGGGGTTAGGGACAGTGGG 15063 Query 378 AA 379 || Sbjct 15064 AA 15065 >seq8169 Length=151362 Score = 78.8 bits (86), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 4/64 (6%) Strand=Plus/Minus Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 || |||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 133485 CAGCAGGGTCT-CTTTCCCCGCT---TCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 133430 Query 354 TAGA 357 | || Sbjct 133429 TGGA 133426 >seq1754 Length=6803 Score = 75.2 bits (82), Expect = 4e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 ||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 3081 ATCCATTCATGTGCGTCACTAATTAGATGACGAGTCATTTGGCTAC 3126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633621770368